Gene Amir_2158 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_2158 
Symbol 
ID8326347 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp2382757 
End bp2383785 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content72% 
IMG OID644942708 
Productvirulence factor Mce family protein 
Protein accessionYP_003099949 
Protein GI256376289 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1463] ABC-type transport system involved in resistance to organic solvents, periplasmic component 
TIGRFAM ID[TIGR00996] virulence factor Mce family protein 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0278327 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCGGCG GGGTGGGTGG GCTGGCGGGG CCGCTGGTCA AGTTCGGGGT GTTCGTCGTC 
GTCACCGTCG CGGCCACCGC GTTCCTCGCC GCCACGATCA CCGGCGTCGA CCTCGGGCCG 
GGGACCGGGT ACACCGCCCG CTTCACCGAC GTCACCGCGC TCGCCGAGGG CGACGAGGTG 
CGCATGTCCG GGGTGCGGAT CGGGCAGGTC GAGTCGATGG CGCTGGTGGA CGACGAGCTC 
GTCGACGTCC GCTTCTCGGT GGAGCGCGGG CGTTCGCTGT CCGCCGAGGT CACCGCGACC 
GTCAAGTACC GCAACCTGGT CGGCCAGCGC TACGTCTCGC TCGACCAGCC CGCCGGGCGG 
ATCGGCGAGC GGCTGCCCGA GGGCGGGCTC ATCCCGGTCG AGCGCACCAC GCCCGCGCTC 
GACCTCACCG CGCTGTTCAA CGGGTTCCGG CCGCTGTTCC AGGCGCTGAA CCCCGAGGAC 
GTCAACCGGC TGTCGCTGCA GATCGTCCAA GTCCTGCAAG GAGAGGGCGG CACGGTCGAG 
AGCCTGCTCG CGCACACCGC TTCCCTCACC TCCGCGCTCG CCGCCAAGGA CCGGGTGATC 
GGCGAGGTGG TGGACAACCT CAACACCGTG CTCCAGACGG TGAACTCGCG CGGCGACAAG 
TTCTCCTCGC TCATCGCCGC CCTGCGCGCC CTGGTGTCCG GGTTCGCCGC CGACCGGGAG 
AGCGTCGGCT CCGCCATCGG CGGCATCGGC GCGCTCACCG ACAGCACCGC CCGCCTGCTG 
GAGCAGGGAA GGCGACCGCT CAAGGACGAC GTCGACCGGC TCGGCCTGCT CGCGGGGAAC 
CTCGCCGACG CGCCCGAGCT GGAGTCCTTC GTGCGCACCC TGCCGGTGAA GTTCGAGGCC 
ATCGGCCGCA CCGCCTCCTA CGGCTCGTGG CTCAACTTCT ACCTGTGCCT GGCGAAGTCC 
GACGCGCCGC CCGCGCCGGG CGGCGGCGAC GTCGGCATCC CCCTCACCGA AGCGAGGTGC 
CGCCGATGA
 
Protein sequence
MRGGVGGLAG PLVKFGVFVV VTVAATAFLA ATITGVDLGP GTGYTARFTD VTALAEGDEV 
RMSGVRIGQV ESMALVDDEL VDVRFSVERG RSLSAEVTAT VKYRNLVGQR YVSLDQPAGR 
IGERLPEGGL IPVERTTPAL DLTALFNGFR PLFQALNPED VNRLSLQIVQ VLQGEGGTVE 
SLLAHTASLT SALAAKDRVI GEVVDNLNTV LQTVNSRGDK FSSLIAALRA LVSGFAADRE 
SVGSAIGGIG ALTDSTARLL EQGRRPLKDD VDRLGLLAGN LADAPELESF VRTLPVKFEA 
IGRTASYGSW LNFYLCLAKS DAPPAPGGGD VGIPLTEARC RR