| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2141 |
|---|
| Symbol | |
|---|
| ID | 8326330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 2366708 |
|---|
| End bp | 2367310 |
|---|
| Gene Length | 603 bp |
|---|
| Protein Length | 200 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644942691 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003099932 |
|---|
| Protein GI | 256376272 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000550599 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGACG ACGAGCTGCT CGTCATCCGC TGCAAGCTCG GTGAGCGGGA GGCGTGCGCC
GAACTGGTGC GGGCTTGGCA CCCGGTCGTG GAGCGGTATG TCGCGCGGAT GTTGGGGCGT
GGTGATGACG ACGCGGTGCA GGAGGTCTGG ATCGGGGTGT TCACCGGGTT GCCGAGGTTG
CGCGACACGG GGCGGTTCAG GGCTTGGCTG TACACGATCG CCCGGCGGGC TGTGGTGAAC
CGGTTGCGGG GGGTTTACCG GGAGGCGCGG GTTGAGCTTT TGGGGTCTTC CGGTGGGTCT
GGTGGTCCGG GGGGTTCTGG TGGGTCTGGT TGGTCCGGTG GGTCTGGTGG CTCTGGTGGT
TCCGGTGAAC GGCCCATCGA TCCGGTGGCC GATCTGGTGC TGGACCGCGA GGCGGTCGCG
GCGGGGTTGG CCGACCTGCC GCCGCTGGAA CGCGAGGTGA TCGTGCTGTT CCACCTGGAG
GACCTGGCGC TGGAGACCTG CGCGCAGGTG TGCGGAGTGC CGGTGGGAAC CGTCAAGTCC
CGGCTCAACC GGGCACGCGG CCTGCTGCGG GCGGCGTTGG AGCGGAAGGG GTATCCGGCG
TGA
|
|---|
| Protein sequence | MDDDELLVIR CKLGEREACA ELVRAWHPVV ERYVARMLGR GDDDAVQEVW IGVFTGLPRL
RDTGRFRAWL YTIARRAVVN RLRGVYREAR VELLGSSGGS GGPGGSGGSG WSGGSGGSGG
SGERPIDPVA DLVLDREAVA AGLADLPPLE REVIVLFHLE DLALETCAQV CGVPVGTVKS
RLNRARGLLR AALERKGYPA
|
|---|
| |