| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2086 |
|---|
| Symbol | |
|---|
| ID | 8326275 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 2308611 |
|---|
| End bp | 2309414 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644942637 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_003099878 |
|---|
| Protein GI | 256376218 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | [TIGR00025] ABC transporter efflux protein, DrrB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCA CCACGAGCGG CGCCAGGCCG CTGGGCGACT CCCTGGTCAT GGTGCGCCGC
AACCTCAAGC GGGTGCTGCG CTACCCGTCC ATGACCCTGC AGCTGATCGG CACCCCGGTC
CTGCTCCTGC TGCTGTTCGT GCACGCCTTC GGCGGCGTCC TCGGCGCGGG CCTGGGCACC
GGGGTGGGTG GCTTCGCCGG TGGTCGCGAC GCGTACCTGG TGTACGTGCT CCCGGCGATC
CTGGTCATGA CGGTCACCAC GATCGTCCAA GGCACCGCGA TCTCGGTCGC CATGGACCTC
ACCGAGGGCG TCATCACCCG CTTCCGCACC ATGGACATCG CCCGCACCTC GGTGCTCACC
GGCCACGTCG TCGGCAGCGT CATCCAGTCC GCGCTCGGCG GCCTGGTCCT GTTCGCGGTG
GCCCTGCTGC TCGGCTTCCG CCCCGGCGCG GGCCCGCTGG GACTGCTGGC GGCGCTCGGC
CTCCACGTCC TGCTCTCGCT CGCCCTGGTC TGGCTCACGA TCGCGCTCGG CCAGCTCAGC
GAGAGCGTGG AGACGGCCAG CACCCTGCCC ATGCCGCTGA TGTTCCTGCC GTTCCTGGGG
AGCGGCTTCG TCCCCGCCGA GTCGATGCCC GCCGGGCTGC GCTGGTTCGC CGAGAACCAG
CCGTTCTCGC CGATCATCGA GACCCTGCGC GCCCTGCTCG CGGGAACCGC CCCCGAGCAC
CTGTGGCCCG CGCTCGGCTG GTGCGCGCTC ATCGGCGTCG GCGGCTACCT CTGGTCCAGG
CGCCTCTACG ACCGCGAACG CTGA
|
|---|
| Protein sequence | MSATTSGARP LGDSLVMVRR NLKRVLRYPS MTLQLIGTPV LLLLLFVHAF GGVLGAGLGT
GVGGFAGGRD AYLVYVLPAI LVMTVTTIVQ GTAISVAMDL TEGVITRFRT MDIARTSVLT
GHVVGSVIQS ALGGLVLFAV ALLLGFRPGA GPLGLLAALG LHVLLSLALV WLTIALGQLS
ESVETASTLP MPLMFLPFLG SGFVPAESMP AGLRWFAENQ PFSPIIETLR ALLAGTAPEH
LWPALGWCAL IGVGGYLWSR RLYDRER
|
|---|
| |