Gene Amir_2049 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_2049 
Symbol 
ID8326238 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp2273320 
End bp2274330 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content68% 
IMG OID644942600 
ProductSubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_003099841 
Protein GI256376181 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGGCA GGAGCAGGAG GGGCCTGGTC GCGATCAGCG CGGCGCTGTG CCTCGCGGTG 
TCCGGCTGCG GGCTGGAGAG CTCGTTCGCG CTGCCGTTCG AGGTGGCGCC CGGCTCGATC 
AGGCCGGAGC CCGCGCTGGA GGGCGTGAAG GTCTCGGTGG GGTCCAAGGA CTTCACCGAG 
AACATCGTGC TCGGCTACAT CACCGAGGTC GCGCTGGCGG CGGCGGGCGC CGAGGTCAAC 
GACATGACCA ACATCCAGGG CTCGAACAGC TCGCGGCAGG CGCTGCTGAC CGGTGACGCC 
GACCTGTCCT GGGACTACAG CGGGACGGGC TGGATCAGCT ACCTGGGCAA CACCGAGCCG 
ATTCAGGGCG AGCGCGAGCA GTACGAGGCG GTGCGCGAGG CCGACCTGGA GCGCAACGGC 
CTGGTGTGGC TGGACTACAC GAAGGTCAAC AACACCTACG CCTTTGCCGT CACGCGGGAG 
TTCGCCGAGG CCAACAACCT CAGCACCACG AGCCAGATGG CCGAGCTGGT GAAGAACGAC 
CCCGGCAAGG GCGTGTTCTG CCTGGAGACC GAGTTCATCA GCCGCAACGA CGGGTTCCCC 
GGCGTGGCGC AGACCTACGG CTTCGACGCG GGCGCGGCGC AGGTGAAGAC CTTCGGCAGC 
GGCACGATCT ACACCGCGAC CTCCGACGGG CTGTGCAACT TCGGCGAGGT GTTCACCACC 
GACGGCCGCA TCCTGGCGCT GGACCTGGTG GTGCTGGAGG ACGACAAGAA GTTCTTCCCC 
CAGTACAACG CCTCCCTGGT GCTGCGCGAG GAGTTCCACG AGCAGCACCC GGAGATCGAG 
CGGATCATGA CGCCGGTGTT CGAGAAGCTG GACAACGACA CGATCATCCG GCTGAACGCC 
GAGGTGGACG TGGACGGCCG CGACCCGGCG GCGGTGGCGC GCGACTGGAT GGTGGGCGAG 
GGGTTCGTGT CGATCCCCGA CGACACCATG GCGGCGGGCG CGCGGCGCTA G
 
Protein sequence
MSGRSRRGLV AISAALCLAV SGCGLESSFA LPFEVAPGSI RPEPALEGVK VSVGSKDFTE 
NIVLGYITEV ALAAAGAEVN DMTNIQGSNS SRQALLTGDA DLSWDYSGTG WISYLGNTEP 
IQGEREQYEA VREADLERNG LVWLDYTKVN NTYAFAVTRE FAEANNLSTT SQMAELVKND 
PGKGVFCLET EFISRNDGFP GVAQTYGFDA GAAQVKTFGS GTIYTATSDG LCNFGEVFTT 
DGRILALDLV VLEDDKKFFP QYNASLVLRE EFHEQHPEIE RIMTPVFEKL DNDTIIRLNA 
EVDVDGRDPA AVARDWMVGE GFVSIPDDTM AAGARR