| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1979 |
|---|
| Symbol | |
|---|
| ID | 8326164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 2193564 |
|---|
| End bp | 2195192 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644942528 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_003099773 |
|---|
| Protein GI | 256376113 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACGA AGTGGAAGAG GCCGTTCACC GCACTGGTGG CGGGCGGTCT GGTCGCGGGC
CTGGTGGCCT GCAGCGGGGA CGACCCCGGT TCGGAGCCGG TGAACCTGGA CGGCAAGCGG
GTGGGCGCCA TGGCCGACTT CGCCGCGGGG ACGCCGTTCA AGGCCACCGA GCCGCTGGAC
TTCGGCATCC TCTACAACGA CCACGCCAAC TACCCGATCA AGAACGAGTG GATGCTGTGG
TCGGAGCTGA CCTCGCGCAC CAACGTCACG CTCAAGCCGA CGGTGGTGCC CAACAGCGAC
TACGACCAGA AGCGCAGCCT GGTCATCGGG GCCGGTGACG CGCCGGAGAT CATCTCCAAG
ACCTACCCCG GCATGGAGCG GCCGTTCGTC GCCTCCGGCG CGATCCTGCC GGTCAGCGAC
TACCTCGACC TGATGCCGAA CTTCAAGGCC AAGGTCGAGA GGTGGGGGCT GAAGAAGGAC
CTGGAGACGC TGCGCCAGGA CGACGGCAAG TTCTACGTGC TGCCCGGCCT GCACGAGGCC
CCGTGGCAGG ACTACACGCT GGCGTTCCGC ACCGACGAGC TGACCCGGCT GGGCATCGCG
ACGCCGAAGA ACTGGGACGA GGTCCACACC GCGCTCAAGG CGATCAAGGC GGCGCACCCG
GACAGCTACC CGCTGTCGGA CCGGTTCGAG GGCAAGGCGC TGCTGAACTA CCTCGGCATG
ACCTACGGCA CCGCCGCCGG GTGGGGCTAC GTCAACGCGA CCTGGGACGA GAAGGCGCAG
AAGCTGGAGT ACAGCGCCTC CAGCCCGCAG TACAGGCAGA TGCTGGAGTA CCTGCGCAAG
CTCGTCGACG AAGGGCTGCT CGACCCGGAG AGCTTCACCC GCAAGGACGA CCAGATCGCG
ATCCGCAAGT TCGCCAACGG CGAGTCGTTC GCCATCAGCG CCAACGCGCA GAACGTGGTC
AACGACTACC GGCCCGCGAT CTCCGGCATC CCCGGCGCGA CCGTGGCGAA GATCCCGCTG
CCCGCGGGGC CCGCCGGGAA CCTGATCACC GGGTCGCGGC TGGAGAACGG GCTGATGATC
CCGGCCAAGG CCGCCGAGAG CGAGCACTTC GTCGCGATGA TGCAGTACGT CGACTGGGTC
TGGTACTCCG AGGAGGGCCA GGAGCTGGTC AAGTGGGGCG TGCCCGGCAC GACCTACGAC
AAGGACGCCT CGGGCAAGCG GGTGCTGAAC CCCGGCGTCG CCTACGCGGG CACGAACACC
GGCGCGCCCA AGCACCTGCA GAAGGACTTC GGGTTCGCGG GCGGCGTGTT CGCCTACGGC
GGCCCGACGG AGCTGCTGCG CTCGACGTTC ACCGACGAGG AGATCGCGTT CCAGGAGGAG
ATGGCGAAGA AGACGTCCGC CCCGCTGGTG CCGCCGTACC CGTTCACCGA GGAGGAGCGC
GAGCAGTCCT CGCTCTGGGA GACCCCGCTC AAGGACTACG CGAACCAGTC GGCGCTGCAG
TTCATCCTGG GCGACCGGGA CCTGTCGACC TGGGACGCGT ACGTGAGCGA GCTGGACGCC
AAGGGGCGGA CGCAGTTCGT GGACCTGGCC AACAGCGCCC ACCAGCGCTA CAAGCAGAAG
AACGGCTGA
|
|---|
| Protein sequence | MRTKWKRPFT ALVAGGLVAG LVACSGDDPG SEPVNLDGKR VGAMADFAAG TPFKATEPLD
FGILYNDHAN YPIKNEWMLW SELTSRTNVT LKPTVVPNSD YDQKRSLVIG AGDAPEIISK
TYPGMERPFV ASGAILPVSD YLDLMPNFKA KVERWGLKKD LETLRQDDGK FYVLPGLHEA
PWQDYTLAFR TDELTRLGIA TPKNWDEVHT ALKAIKAAHP DSYPLSDRFE GKALLNYLGM
TYGTAAGWGY VNATWDEKAQ KLEYSASSPQ YRQMLEYLRK LVDEGLLDPE SFTRKDDQIA
IRKFANGESF AISANAQNVV NDYRPAISGI PGATVAKIPL PAGPAGNLIT GSRLENGLMI
PAKAAESEHF VAMMQYVDWV WYSEEGQELV KWGVPGTTYD KDASGKRVLN PGVAYAGTNT
GAPKHLQKDF GFAGGVFAYG GPTELLRSTF TDEEIAFQEE MAKKTSAPLV PPYPFTEEER
EQSSLWETPL KDYANQSALQ FILGDRDLST WDAYVSELDA KGRTQFVDLA NSAHQRYKQK
NG
|
|---|
| |