Gene Amir_1972 details

Gene Information

• Locus tag: Amir_1972
• ID: 8326157
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: -
• Start bp: 2184597
• End bp: 2185208
• Gene Length: 612 bp
• Protein Length: 203 aa
• Translation table: 11
• GC content: 78%
• IMG OID: 644942521
• Product: transcriptional regulator, TetR family
• Protein accession: YP_003099766
• Protein GI: 256376106

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.000120212
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCACCAC GGAGGGCCGC GGCACTGCCC GAGGGCGTGA CCGCGCGCGA GCACCTGATC 
ACCGCGGCGG CCGGGCTGGT CGCCGAGCGC GGCACGGCCG GGCTGACCGT GCGGGACGTC 
GCGCGCGCGG CCGGGCTCGC GCCGGGCGTG CTGTACAACC ACTTCGCGGA CCGCGAGGAG 
CTGCTGGCGC TCGCGCTGCA CCGGCACGTG CGGCAGGTGG AGGACGCGCA GGGGTTCGCC 
TGGGGCGGTG ATCTCGCCGC CGACCTGCGG GCGTTCGTGG CGCACGCGGT GGCGGTGCAC 
CGGGCGGTGC TGCCCGCGCT GGCCGGGCTG GTGGGGCAGC CGGAGCTGGC GGCCAGGTTC 
GAGGCGCTGG GCAACCCGAT GGGCGGCGGG CTCGGCATGG TGGAGCTGCT GGCGCGGCGG 
CTGCGCGCGG AGCGGGACGC CGGGAACCTG GCGGCGGGAG CGGACGTGGA GACGGTCGCG 
ACGCTGGTGG TGGGGGCGTG CCACGAGCTG GCGGTGCCCA GGCTGTTCGG GCTGGGCGCG 
GTGGAGGCGT TCCCGCCGGA GTGCGAGGAC GCGGTGGTGG ACACGGTGCT GCACGGGGTG 
CTGCCGCGCT GA 

 

Protein sequence

MAPRRAAALP EGVTAREHLI TAAAGLVAER GTAGLTVRDV ARAAGLAPGV LYNHFADREE 
LLALALHRHV RQVEDAQGFA WGGDLAADLR AFVAHAVAVH RAVLPALAGL VGQPELAARF 
EALGNPMGGG LGMVELLARR LRAERDAGNL AAGADVETVA TLVVGACHEL AVPRLFGLGA 
VEAFPPECED AVVDTVLHGV LPR