Gene Amir_1924 details

Gene Information

• Locus tag: Amir_1924
• ID: 8326109
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 2135399
• End bp: 2137411
• Gene Length: 2013 bp
• Protein Length: 670 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 644942473
• Product: glycosyl transferase family 39
• Protein accession: YP_003099718
• Protein GI: 256376058
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCGCCC TGCTCACCGA ACCACCGGCC ACCCCGGCCG CCGAGCCGCC CGCGCGTGGC 
CGCCTGGCCA GGCTGGTGCT CGGACCGGCC GACGCGCCCC GGTACGCGCG CCCCGCGCTC 
CTGCTGCTGC TCGCCGCCAC CGCCGCGCTG TACCTGTGGG ACCTGACCGC CTCCGGCTAC 
GGCAACAGCT TCTACGCCGC CGCCGTGCAG GCCGGGACGC AGGACTGGAA GGCGTGGCTG 
TTCGGCTCGC TGGACTCCGG CAACGCGATC ACCGTCGACA AGCCGCCCGC GGCGCTGTGG 
CTGACCACCG CGTTCGCCAG GGTGTTCGGG TTCTCCAGCT TCACCGTGCT CGCGCCGCAG 
GCCCTGATGG GCGTGGCGGC GGTGGCGCTG ACGCACGCGA CGGTCAAGCG CACCAGCGGG 
CACCTCGCGG GGCTGCTGGC GGGCGCGGCG CTGGCCGTGA CGCCGGTCGC GGTGCTGATG 
TTCCGGTTCA ACAACCCGGA CGCGCTGCTC GTGCTGCTCA TGGTCGCGGG CGCGTACTGC 
CTGGTGCGGG CGCTGGAGCG GGCGAGCCTG AAGTGGGTGC TGCTGGCCGG GTCCGCGATC 
GGGTTCGCGT TCCTGACGAA GATGCTGCAG GGCTTCCTGG TGCTGCCCGC GTTCGCCCTG 
GTGTACCTGG TGGCCGCGCC GACCTCGCTG GGCAGGCGCG TCGCGCACCT GTTCGCGGCG 
CTGGGCGCGG TCGTGGTGTC GGCGGGGTGG TTCATCGCGC TGGTGGACCT GTGGCCGAGC 
GACTCGCGGC CGTACATCGG CGGGTCGACG GACAACACGC TGCTGGAGCT GGCGCTGGGC 
TACAACGGGC TCGGCCGCAT CCTCGGCGGG CAGGGCAACG GCGGTGGCGG CGGCGGCATG 
GGCGGCGGGA ACACCGGGTT CGGCGGGGAG ACCGGGATCT CCCGGATGTT CGGCGCCGCG 
TTCGGCGGGG AGATCTCCTG GCTGCTGCCC GCCGCGCTGG TCGCGCTGGT CGCCGGCCTG 
TGGTTCACCC GCCGCGCGCC CCGCACCGAC CGGACGCGTG CCGCGCTGCT GCTGTGGGGC 
GGGTGGTTGA TCGTCACGGC GGTCGTGTTC AGCTTCATGA GCGGCACCGT GCACCCGTAC 
TACTCGGTGG CGCTGGCCCC CGCGATCGCG GCGCTGGTCG CCATCGGCGG GCGGGAGCTG 
TGGCGGGCCA GGAAGTTCGC GACGGCTCGG GCGTTCCTGG CGGCGATGGT GGGCGTGACG 
GCGGTGTGGG ACCACGTGCT GCTGGCCCGG TCCTCGGACT ACGCGCCGGT GATCCGGTAC 
GCGGTGCTGG TGGTGGGGTT CGTGGTGGTG CTGGTGGTGC TGCTGGACCC GAGGCGGGTG 
GCGAAGGGCG CGGTGGCGCT GGCCGCGGCG GCGGTGCTGG TGGTCGGTGT GGGTGGCGGC 
GCGTGGGCGG TCAGCACGGC CGGTCAGGCG CACACCGGGT CGATCCCGTC GTCCGGGCCT 
GCGGGGAGCT CGATGGGCTT CGGCGGTGGG GGCGGTGGCG GTGGCGGTGG CCAGATGCCC 
GGTGGTGACG GGCAGGCGCA GGACGGGCAG GCACAGGACG GGCAGGCGCA GGACGGGCAG 
ATGCAGGACG GGCAGATGCA GGACGGCGGG ATGCGCGGCG GTCCCGGTGG CGGGACCAGC 
AGCGAGGTGG TCGAGCTGCT GAAGAGCGCC ACCTCGAAGT GGGCTGCTGC CACCACCGGT 
TCGCAGTCGG CGGCCGAGCT GGAGCTGTCC ACCGGCAAGG CGGTCATCGC GATCGGCGGC 
TGGAGCGGCT CGGACAACGC CCCGACGCTG GAGCAGTTCC AGCGGGCCGT GGCGAACGGC 
GAGATCTCGT ACTACATCAG CGGTGGCGGG ATGGGCGGCG GCATGGGCGG TCGCGGCGGC 
TCGGAGTCGT CCACGTCGGC GATCGCCACG TGGGTCCAGG AGAACTACAC CGCGCAGACG 
GTGGGCGGGA GCACGCTCTA CGACCTGAGG TGA 

 

Protein sequence

MTALLTEPPA TPAAEPPARG RLARLVLGPA DAPRYARPAL LLLLAATAAL YLWDLTASGY 
GNSFYAAAVQ AGTQDWKAWL FGSLDSGNAI TVDKPPAALW LTTAFARVFG FSSFTVLAPQ 
ALMGVAAVAL THATVKRTSG HLAGLLAGAA LAVTPVAVLM FRFNNPDALL VLLMVAGAYC 
LVRALERASL KWVLLAGSAI GFAFLTKMLQ GFLVLPAFAL VYLVAAPTSL GRRVAHLFAA 
LGAVVVSAGW FIALVDLWPS DSRPYIGGST DNTLLELALG YNGLGRILGG QGNGGGGGGM 
GGGNTGFGGE TGISRMFGAA FGGEISWLLP AALVALVAGL WFTRRAPRTD RTRAALLLWG 
GWLIVTAVVF SFMSGTVHPY YSVALAPAIA ALVAIGGREL WRARKFATAR AFLAAMVGVT 
AVWDHVLLAR SSDYAPVIRY AVLVVGFVVV LVVLLDPRRV AKGAVALAAA AVLVVGVGGG 
AWAVSTAGQA HTGSIPSSGP AGSSMGFGGG GGGGGGGQMP GGDGQAQDGQ AQDGQAQDGQ 
MQDGQMQDGG MRGGPGGGTS SEVVELLKSA TSKWAAATTG SQSAAELELS TGKAVIAIGG 
WSGSDNAPTL EQFQRAVANG EISYYISGGG MGGGMGGRGG SESSTSAIAT WVQENYTAQT 
VGGSTLYDLR