| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1865 |
|---|
| Symbol | |
|---|
| ID | 8326050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 2058458 |
|---|
| End bp | 2059984 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644942414 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003099659 |
|---|
| Protein GI | 256375999 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.251568 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG ACATCCTGGT GATGCGCGGC ATCACCAAGA GGTTCGCGGG GGTCACCGCG
CTGAGCGACG TCAACTTCGC CGTTCAGCGC GGTGAGATCC ACGCGATCTG CGGGGAGAAC
GGCGCTGGCA AGTCCACGCT GATGAAGGTG CTCTCCGGGG TGCACCCGCA CGGCTCCTAC
GAAGGCGAGA TCGTCTACGA CGGGCAGCCG GTCGCGTTCT CGACCGTCCG CGACAGCGAG
CGGCTCGGCA TCGTGATCAT TCACCAGGAG TTGGCGCTCG CCCCGCAGCT CTCCATCGCG
GAGAACATGT TCCTGGGCAA CGAGCGCGCC TCCAAGGGCC TGATCGACTG GAACAGGACC
AACCACGAGG CAGCCGAGCT GCTGGCCCGC GTCGGCCTCC GGGAGAACCC GGTGACGCAG
GTCAGCGACA TCGGCGTGGG CAAGCAGCAG CTGGTGGAGA TCGCGAAGGC GCTGTCGAAG
GAGGTGAAGC TGCTCATCCT CGACGAGCCC ACCGCGGCGC TCAACGACGA GGACTCGGCC
CACCTCCTCG ACCTGCTCGA AGGGCTGCGG GACGAGGGGA TCACCTCGGT GATCATCTCG
CACAAGCTCA ACGAGATCAC GCGGATCGCG GACAACATCA CGATCCTGCG CGACGGCAGG
ACCATCGAGA CGCTGCCCGC CGAGGGGCTC AGCGAGGACC GGATCATCTC CGGCATGGTC
GGCCGCGACC TGGAGAACCG CTACCCGCCC CGTGAGCCGA AGATCGGCGA CGAGGTGCTG
CGGATCGAGG ACTGGACGGT GCACAGCCCC GTCCAGGCCG ACCGGGTCGT GGTCGACAAG
GCCTCGCTCA CCCTGCGGCG CGGCGAGATC GTCGGTCTCG CCGGGCTCAT GGGCGCGGGC
CGCACCGAGC TGGCGATGAG CGTGTTCGGC CGGACCTACG GCAGCAACAT CTCCGGCAAG
GTCTTCAAGA ACGGCCAGGA GATCAGCACG AAGACCGTGG ACCAGGCGAT CGCCCACGGC
ATCGCCTACG TCAGCGAGGA CCGCAAGCGG TACGGGCTCA ACCTGATCGC CGACGTCCAG
CGCAACATCT CCGCGGCGGC GCTCCGCAAG CTCGCGCCCA AGAAGTGGGT GAACGAGAAC
GAGGAGCACT CCGTCGCCGA GAAGTACCGG CGGAGCATGA ACATCAAGAC GTCCAGCGTG
GCGACCACGG TCGGCACGCT GTCCGGCGGC AACCAGCAGA AGGTCGTGCT GGCCAAGTGG
ATGTTCACCG ACCCCGAGGT GCTGATCCTC GACGAGCCGA CCCGAGGCAT CGACGTCGGC
GCGAAGTACG AGATCTACAC GATCATCAAC GAGCTGGCCG AGCAGGGCCT CGCCGTGCTG
GTGATCTCCT CGGAGCTGCC GGAGCTGCTC GGCCTGTGCG ACCGCGTGTA CGCGCTGTCG
TCCGGCCGGA TCACCGGTGA GGTGGACCGC GCCGAAGCAA CCCAGGAACG CCTGATGCAG
TACATGACCC AGGGACAGAT GACATGA
|
|---|
| Protein sequence | MTDDILVMRG ITKRFAGVTA LSDVNFAVQR GEIHAICGEN GAGKSTLMKV LSGVHPHGSY
EGEIVYDGQP VAFSTVRDSE RLGIVIIHQE LALAPQLSIA ENMFLGNERA SKGLIDWNRT
NHEAAELLAR VGLRENPVTQ VSDIGVGKQQ LVEIAKALSK EVKLLILDEP TAALNDEDSA
HLLDLLEGLR DEGITSVIIS HKLNEITRIA DNITILRDGR TIETLPAEGL SEDRIISGMV
GRDLENRYPP REPKIGDEVL RIEDWTVHSP VQADRVVVDK ASLTLRRGEI VGLAGLMGAG
RTELAMSVFG RTYGSNISGK VFKNGQEIST KTVDQAIAHG IAYVSEDRKR YGLNLIADVQ
RNISAAALRK LAPKKWVNEN EEHSVAEKYR RSMNIKTSSV ATTVGTLSGG NQQKVVLAKW
MFTDPEVLIL DEPTRGIDVG AKYEIYTIIN ELAEQGLAVL VISSELPELL GLCDRVYALS
SGRITGEVDR AEATQERLMQ YMTQGQMT
|
|---|
| |