Gene Amir_1855 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1855 
Symbol 
ID8326040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp2042023 
End bp2043003 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content68% 
IMG OID644942404 
Productperiplasmic binding protein/LacI transcriptional regulator 
Protein accessionYP_003099649 
Protein GI256375989 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.373009 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTGAAGA AGATCACCGC CGCCGCGTGC GCCGCCTTGA TCGGCGCCCT CAGCCTCACC 
GCCTGCGGAT CGTCCGGTTC CGGAGACTCC GGCTCGTCCG GGGGTGGCGA CGACAAGCTC 
ACGATGGGGT TCGCGCAGGT CGGCGCCGAG AGCGGGTGGC GCACCGCGAA CACCAAGTCC 
GTGCAGGAGG CCGCTGCGGC GGCGGGCGTC GACCTGAAGT TCTCCGACGC GCAGCAGAAG 
CAGGAGAACC AGCTCAAGGC GATCCGGTCG TACATCCAGC AGAAGGTCGA CGTCATCGCC 
TTCAGCCCGG TGGTCGAGAC CGGTTGGGAC ACCGTCCTGC TGGAGGCCAA GCGCGCCAAC 
ATCCCGGTAA TCCTCACCGA CCGCGCGGTC GACTCCGAGG ACACCTCGCT GTACAAGACC 
TTCCTCGGCT CGGACTTCGT CGAGGAGGGC CGCAAGGCCG GTGACTGGCT GGTCGCCAAC 
GTGCAGGGCG AGGTGAACGT CGCGGAGCTC CAGGGCACCA CCGGCGCCGC CCCGGCGATC 
GACCGCAAGG CCGGGTTCGA GGAGAAGATC GCGGGCAAGT CGAACATCAA GGTCGTGGCC 
TCGCAGACCG GTGACTTCAC CCGGTCCGGC GGCAAGCAGG TCATGGAGGC GTTCCTCAAG 
TCCAACCCGG AGATCAACGT CGTCTACGCG CACAACGACG ACATGGGCCT GGGCGCCATC 
GAGGCCATCA AGGCCGCGGG CAAGAAGCCG GGCGAGGACA TCAAGATCAT CACGGTGGAC 
GCCGTCAAGG ACGGCATGAC CGCGCTGGCG GGCGGCGAGA TCAACTTCAT CGTGGAGTGC 
AACCCGCTGC TGGGCGAGCA GCTGATGGAC CTGGCCAAGA AGGTCGTCGC GGGCGAGGAG 
ATCCCGGCCC GCGTGGTGAC CGAGGAGACC ACGTTCACCA GCGAGCAGGC CAAGGCCGCG 
CTGCCCGACC GCAAGTACTG A
 
Protein sequence
MLKKITAAAC AALIGALSLT ACGSSGSGDS GSSGGGDDKL TMGFAQVGAE SGWRTANTKS 
VQEAAAAAGV DLKFSDAQQK QENQLKAIRS YIQQKVDVIA FSPVVETGWD TVLLEAKRAN 
IPVILTDRAV DSEDTSLYKT FLGSDFVEEG RKAGDWLVAN VQGEVNVAEL QGTTGAAPAI 
DRKAGFEEKI AGKSNIKVVA SQTGDFTRSG GKQVMEAFLK SNPEINVVYA HNDDMGLGAI 
EAIKAAGKKP GEDIKIITVD AVKDGMTALA GGEINFIVEC NPLLGEQLMD LAKKVVAGEE 
IPARVVTEET TFTSEQAKAA LPDRKY