| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1843 |
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| Symbol | |
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| ID | 8326028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 2027491 |
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| End bp | 2029683 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644942392 |
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| Product | Pectate lyase/Amb allergen |
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| Protein accession | YP_003099637 |
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| Protein GI | 256375977 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4677] Pectin methylesterase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.5236 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGATCC CGAGGTATGC GCTGGTGCTT TCCTGCGTGC TGGCCGGGCT GGTCGCCCCG
CCCGCCCTCG CAGGTCAAGA CCCTGAAGCC GCAGGTCGCG ACCCCTCCCG GCAGGTGCTG
CAGCCCGGTG ACGGCTGGGG TTCGGCGGGC AGCGGGACCA CCGGGGGCTC CGCCGCGAGC
ACACCCGTGG TGGTGCGGAC AGCGGCCGAG TTACGCGCGG CGCTGGCCGC TCCGGCACCC
CGGATCGTCA AGATCAAGGG GGTGATCGAC GTCAGCGGGA ACTGCGCATC CTATGAAACC
GACGGCTATT CCCTGAAGGC CTATCTGGAC GCTTACGACC CCGCTGTCTG GGGGCGCGAC
CGGGAGCCGT CCGGGCCACT GGAGGACGCG CGCGCCGCTT CGGCCAAGCG GCAGGCCGAA
GCGATCCGGT TCGACGTCGG CTCCGACACC ACGCTCATCG GCGACGGCCC CGGCGCGGGC
ATCACCGGCG GGAACCTGCG GATCGCGGGC GCCCGCAACG TGATCGTCCG CCACCTCACC
TTCCGCGACA CCAGCGACTG CTTCCCCCAG TGGGACCCGA CCGACACGGC CGTGGGCAAC
TGGAACTCCG AGTACGACTC GGTCGGCGTG ATCGGCTCCA CGAACGTCTG GGCCGACCAC
AACACCTTCA CCGACCAGCC CAACCCGGAC AGCTCGGCGC CGATCCACTT CGACCGCCCG
TTCCAGCGCC ACGACGGCCA GCTCGACATC ACCAACGGCT CCGACCTGGT CACCGTGTCC
CGCAACCGGT TCGAGGACCA CGGCAAGACC ATGCTGATCG GCTCGTCCAA CAGCTCCACG
GTCGACCCCG GCAAGCTGCG GGTCTCCGTG CACCACAACG TGTTCGCCAA CGTGGAGGAG
CGCGCGCCCC GCGTGCGGTT CGGCAAGGTG CACGTCTACA ACAACCGCTA CGAGCCCGGC
GCGACCCACG TCTACACCTG GGGCGCGGGC GTCCAGTCGC AGCTCTACGT GCAGAACAAC
CACGTCGAGC TGCCCAAGGG AGTCGGCGCG GACGAGCTGC TCTACAACTG GGGCGGCACC
GCCGTCACCG CGAAGGGCAA CCTGGTCGAC GGCCGGCCCA CCGACGTCGT CGCCGCCTTC
AACGCCGCCA ACCCGGACAA GCAGCTCGCC CCCGACGCGG GCTGGACCCC GGAGCTCACC
AGGGGCCTCG AACCCGCGCA CCGGGTCCGC GACCTGCAAG CGGGCGCGCG CCAGGCGGAG
CTCGTCGTCG GCCGGGGCCC CGGCGCCCAC CGGACCGTGC AGTCCGCGAT CGACGCCGCC
CCCGCGTTCG GCACGATCAC CCTGCAGAAG GGCCACTACC GCGAGGTCGT CAAGGTCCCG
GCGGCCAAGC GCGGCCTGAC CCTGCGCGGC GCCACCGGGC GCGCCTCCGA CGTCGTCATC
GACTACGACA ACGCCAGCGG CACCAAGAAG CCCGACGGCA CCACCTACGG CACCACCGGC
AGCGCCACCG CGACCATCGA GGCCGCCGAC TTCACCGCGC GGAACCTGAC CTTCAGCAAC
TCCTTCGACC GCGCGGAGCA CCCGGAGATC ACCGCGACCC AGGCCGTCGC GGTCAAGGCC
ACCGGCGACC GGCAGCTCTA CGACCGGGTC ACCTTCCTCG GCCACCAGGA CACCCTCTAC
GCCGACTCGC CCAACACCGC CACCCGCGCC CGCCAGTACT ACCGCGACTG CGCGATCAGC
GGCGACGTGG ACTTCCTGTT CGGCCGCGCC ACCGCCGTCT TCGACCGCGC CACCATCACC
GCGCTCAGCA GGGGCAGCGA CCCCAACGGC TACATCACGG CCGCGAGCAC CAGGCGCGAC
AACGAGTTCG GCTTCCTGAT CACCGACTCC ACGATCCGCA GCGACGCCGC GCGCGGCACC
TACCACCTCG GCCGCCCCTG GCACCCCGGC GGCGACGTCG ACGCCATCGC CCAGGTCGTC
GTGCGCGACA CCGAGCTGCC CGCCGCCGTG AAGGCCGCGC CGTGGACCGA CATGTCCGGC
TTCTCCTGGC GGGACGCGCG CTTCGCCGAG CACCGCAACA CCGGCCCCGG CTCGGGCACC
GGCGCGGACC GGCCGCAGCT CACCCCCGAG CAGGCCGAGC GCTACACCGC GCGCGCCTAC
CTGTCCGGCG ACGACGGGTG GAACCCCGCA TGA
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| Protein sequence | MRIPRYALVL SCVLAGLVAP PALAGQDPEA AGRDPSRQVL QPGDGWGSAG SGTTGGSAAS
TPVVVRTAAE LRAALAAPAP RIVKIKGVID VSGNCASYET DGYSLKAYLD AYDPAVWGRD
REPSGPLEDA RAASAKRQAE AIRFDVGSDT TLIGDGPGAG ITGGNLRIAG ARNVIVRHLT
FRDTSDCFPQ WDPTDTAVGN WNSEYDSVGV IGSTNVWADH NTFTDQPNPD SSAPIHFDRP
FQRHDGQLDI TNGSDLVTVS RNRFEDHGKT MLIGSSNSST VDPGKLRVSV HHNVFANVEE
RAPRVRFGKV HVYNNRYEPG ATHVYTWGAG VQSQLYVQNN HVELPKGVGA DELLYNWGGT
AVTAKGNLVD GRPTDVVAAF NAANPDKQLA PDAGWTPELT RGLEPAHRVR DLQAGARQAE
LVVGRGPGAH RTVQSAIDAA PAFGTITLQK GHYREVVKVP AAKRGLTLRG ATGRASDVVI
DYDNASGTKK PDGTTYGTTG SATATIEAAD FTARNLTFSN SFDRAEHPEI TATQAVAVKA
TGDRQLYDRV TFLGHQDTLY ADSPNTATRA RQYYRDCAIS GDVDFLFGRA TAVFDRATIT
ALSRGSDPNG YITAASTRRD NEFGFLITDS TIRSDAARGT YHLGRPWHPG GDVDAIAQVV
VRDTELPAAV KAAPWTDMSG FSWRDARFAE HRNTGPGSGT GADRPQLTPE QAERYTARAY
LSGDDGWNPA
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