Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_1762 |
Symbol | |
ID | 8325947 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | + |
Start bp | 1934811 |
End bp | 1937168 |
Gene Length | 2358 bp |
Protein Length | 785 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644942311 |
Product | RNA binding S1 domain protein |
Protein accession | YP_003099556 |
Protein GI | 256375896 |
COG category | [K] Transcription |
COG ID | [COG2183] Transcriptional accessory protein |
TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.432806 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACGACAG CCATTCACCA GAGGATCGCC GAAGAGCTCG GCGTGCGCGC GAACCAGGTG TCCGCCGCCG TCGACCTCCT CGACGGCGGT TCGACCGTTC CGTTCATCGC CCGCTACCGC AAGGAGGCGA CCGGGGCGCT GGACGACGCG CAGCTGCGCT CTCTGGAGGA GCGGCTGGGC TACCTCCGCG AGCTGGAGGA CCGCCGCGCC GCCGTCCTGG AGTCCATCCG CTCCCAGGGC AAGCTCGACG ACGCCCTCGA AGCCCAGATC CTCGCCGCCG ACTCGAAGGC CCGGCTCGAG GACCTCTACC TGCCGTACAA GCCCAAGCGC CGCACCAAGG CCCAGATCGC CCGCGAGCAG GGCCTCGAAC CGCTCGCCGA CGCGCTGCTG AACGACCCGA CGCTGAGCCC GCAGGACACC GCCGCCGGCT ACCTGACCGA GGAGGTCGCC GACGCCGCCG CCGCGCTGCA GGGGGCGCGC GCCATCCTGG TCGAGCGCTT CGGCGAGGAC GGCGACCTGA TCGGCGAGCT GCGCGAGCGC ATGTGGGGCC TCGGCCAGGT CGGCTCGAAG GTCCGCGAGG GCAAGGAGGA GGACGGCGCC AAGTTCGCCG ACTACTTCGA GTTCTCCGAG CCGTTCGCGA AGCTGCCGTC GCACCGCATC CTGGCGCTGC TGCGCGGTGA GAAGGAGGAG GTCCTCGACC TCCAGTTCGA GCCGGGCGAC ACCCCCGAGG AGGGCCCGAG CGGCTACGAG GTCGCCATCG CCGCCCGCTT CGGCGTCGAC GACCGGGGCC GCCCCGCCGA CCGCTGGCTC ACCGACACGG TCCGCTGGGC CTGGCGCACC CGCATCCTCG TGCACCTGGG CATCGACCTG CGCTCCCGGC TGCGCCAGTT CGCCGAGGAC GAGGCCGTGC GCGTGTTCGC CTCCAACCTG CGCGACCTGC TGCTCGCCGC CCCGGCGGGC ACCCGCGCCA CCATGGGCCT CGACCCCGGT TTCCGCACCG GCGTGAAGGT CGCCGTGGTC GACGCGACCG GCAAGGTCGT CGCCACCGAC GTGATCTACC CGCACGTGCC CGCGAACCGC TGGGACGAGT CGATCGCCAA GCTGGCGGCC CTGTCCAAGA AGCACGACGT CGAGCTGATC GCCATCGGCA ACGGCACCGC CTCGCGCGAG ACCGACAAGC TCGCGGGCGA CCTGCTCAAG AAGCACGCGG ACCTCAAGCT CACCAAGGTC GTCGTGTCCG AGGCGGGCGC GTCGGTGTAC TCCGCGTCCG CGTTCGCCTC GGCCGAGCTG CCCGGCATGG ACGTGTCGCT GCGCGGCGCG GTGTCCATCG CCCGCAGGCT CCAGGACCCG CTCGCCGAGC TGGTCAAGAT CGACCCGAAG TCCATCGGCG TCGGCCAGTA CCAGCACGAC CTGTCCGAGT CGAAGCTGTC CCGCTCGCTC GACGCGGTGG TCGAGGACTG CGTGAACGCG GTCGGCGTCG ACCTGAACAC CGCGTCCGCG CCGCTGCTGA CCCGCGTCTC CGGCATCACC GCCGGTCTCG CGGAGAACAT CGTGCAGCAC CGCGACAGCA ACGGTCCTTT CCGGACTCGC AAGGCGCTCA AGGACGTGGC GCGCCTGGGC CCCAAGGCTT TCGAGCAGTG CGCGGGCTTC CTGCGCATCC GCGACGGCGA GGACCCGCTC GACGCGTCCT CGGTGCACCC CGAGGCCTAC CCGGTGGTGC GGCGCATCCA GGAGAGCGCG GGGGCCGACC GGCTCATCGG CAACACCGCG GTGCTGAAGT CGTTGCGGCC CCAGGACTTC GTGGACGACA AGTTCGGCCT GCCGACCGTC ACGGACATCC TGCGCGAGCT GGAGAAGCCC GGCCGCGACC CGCGCCCGGC GTTCAAGACC GCGACGTTCG CCGACGGGGT CGAGAAGATC GCCGACCTCA AGCCCGGCAT GGTGCTGGAG GGCGTGGTGA CGAACGTGGC CGCGTTCGGC GCGTTCGTCG ACGTCGGCGT GCACCAGGAC GGCCTCGTGC ACATCTCGGC GCTGTCGGAC ACCTACGTCA AGGACCCGCG CGACGTGGTC AAGTCCGGCG ACGTGGTGCG GGTGAAGGTG CTGGAGGTCG ACATCCCGCG CAAGCGCATC GGCCTGACCC TGCGCCTCAC CGACGAGCCC GGCCGCAAGC CCAAGGACCA GCAGGGCGAG CGGCGCGGTG GCGGTGGTGG CGGCCAGCGT GGTGGCGGCG ACCGGCGCGG TGGCGGCAAC GGCGGCAGCG GCGGCAGCGG CGGCAACCGG GGGCGCCAGC AGCAGGAGCG CCCGCCCGCC AACAACGCGA TGGCGGAGGC CCTGCGCAGG GCCGGCCTGG GCAAGTGA
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Protein sequence | MTTAIHQRIA EELGVRANQV SAAVDLLDGG STVPFIARYR KEATGALDDA QLRSLEERLG YLRELEDRRA AVLESIRSQG KLDDALEAQI LAADSKARLE DLYLPYKPKR RTKAQIAREQ GLEPLADALL NDPTLSPQDT AAGYLTEEVA DAAAALQGAR AILVERFGED GDLIGELRER MWGLGQVGSK VREGKEEDGA KFADYFEFSE PFAKLPSHRI LALLRGEKEE VLDLQFEPGD TPEEGPSGYE VAIAARFGVD DRGRPADRWL TDTVRWAWRT RILVHLGIDL RSRLRQFAED EAVRVFASNL RDLLLAAPAG TRATMGLDPG FRTGVKVAVV DATGKVVATD VIYPHVPANR WDESIAKLAA LSKKHDVELI AIGNGTASRE TDKLAGDLLK KHADLKLTKV VVSEAGASVY SASAFASAEL PGMDVSLRGA VSIARRLQDP LAELVKIDPK SIGVGQYQHD LSESKLSRSL DAVVEDCVNA VGVDLNTASA PLLTRVSGIT AGLAENIVQH RDSNGPFRTR KALKDVARLG PKAFEQCAGF LRIRDGEDPL DASSVHPEAY PVVRRIQESA GADRLIGNTA VLKSLRPQDF VDDKFGLPTV TDILRELEKP GRDPRPAFKT ATFADGVEKI ADLKPGMVLE GVVTNVAAFG AFVDVGVHQD GLVHISALSD TYVKDPRDVV KSGDVVRVKV LEVDIPRKRI GLTLRLTDEP GRKPKDQQGE RRGGGGGGQR GGGDRRGGGN GGSGGSGGNR GRQQQERPPA NNAMAEALRR AGLGK
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