Gene Amir_1732 details

Gene Information

• Locus tag: Amir_1732
• ID: 8325917
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 1896367
• End bp: 1896969
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644942281
• Product: dTDP-4-dehydrorhamnose 3,5-epimerase
• Protein accession: YP_003099526
• Protein GI: 256375866
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGGGG TGGTCACCCC CAAGCAGGGC ATGGACATGA CGGTCACGCC GACGGAGATC 
GACGGCGTGC GCGTGGTCCA GCCCGAGTGG TTCGAGGACG AGCGCGGCTT CTTCTTCGAG 
TCCTACAGCA AGCGCCGCTG GGAGCAGCAC GGGCTGCACC TGGACTTCGT GCAGGACAAC 
CACTCCCGGT CCAGCAGGGG GGTGCTGCGC GGGCTGCACT TCCAGACCGG ACTCGCCCCG 
CAGCACCGGC TGGTGCGCTG CACCGTCGGC GCCATCTGGG ACGTGGTGGT CGACATCCGG 
GTCGGCTCGC CGACCTTCGG CAAGTGGTTC GGGATCGAGC TGTCCGCGAC CAACCGCACC 
CAGCTGCTGA TGGGGCCGGG CTTCGCGCAC GGCTTCGCGG TGCTGTCCGA CGTCGCCGAG 
GTCCAGTACA AGACCACCGG CTTCCACACC CCCGAGGCCG AGGGCCTGCT GGCCTGGGAC 
GACCCGGACG TGGGCATCCC GTGGCCGATC GAGGACCCGA CGCTGTCCGC GAAGGACTCG 
GCCAACCCGA GCCTCGCCGC CTACCGGGAG AACCCGGCCT TCCACCACGG AGTTGAAGCG 
TGA 

 

Protein sequence

MSGVVTPKQG MDMTVTPTEI DGVRVVQPEW FEDERGFFFE SYSKRRWEQH GLHLDFVQDN 
HSRSSRGVLR GLHFQTGLAP QHRLVRCTVG AIWDVVVDIR VGSPTFGKWF GIELSATNRT 
QLLMGPGFAH GFAVLSDVAE VQYKTTGFHT PEAEGLLAWD DPDVGIPWPI EDPTLSAKDS 
ANPSLAAYRE NPAFHHGVEA