Gene Amir_1727 details

Gene Information

• Locus tag: Amir_1727
• ID: 8325912
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 1890678
• End bp: 1891280
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 77%
• IMG OID: 644942276
• Product: Uracil-DNA glycosylase superfamily
• Protein accession: YP_003099521
• Protein GI: 256375861
• COG category: [L] Replication, recombination and repair
• COG ID: [COG3663] G:T/U mismatch-specific DNA glycosylase
• TIGRFAM ID: [TIGR00584] mismatch-specific thymine-DNA glycosylate (mug)

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.500879
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCCCGGCA CCGCGGCCTT CGGCCTCGCG CCCGGCGGCT CCGCCCCTGA TCCCGGTCCG 
CTGCCCGACC TCCTCGCCCC CGGTCTGTCC GCGCTGCTGT GCGGCATCAA CCCCGGTGGG 
CGGTCCGCCG TCACCGGGCA CCACTACGCG GGGCCCGGCA ACCGGTTCTG GCGCGTGCTG 
CACCTCGCCG GGTTCACGCC CCGCCTGCTC GCGCCCTCCG AGCAGGCGCT GCTGCTCGGG 
TTCGGCATCG GGCTCACGAA CCTCGTCGCG CGTCCCACCG CGCGGGCCGC CGAGCTGGGG 
TCCGCCGAGC TGGTCGCGGG GGCCGGGCGT CTCGCCGGGC TCGTCGAGCG GCACCGGCCC 
GGTGCGGTCG GGGTCGTCGG GGTGAGCGCC TACCGGGTGG CCTTCCGCCG TCCGCGCGCC 
GTCGTCGGGC CGCAGGACGT CGAGCTCGCG GGCGCGCCGC TGTGGGTGCT GCCGAACCCG 
AGCGGCCTCA ACGCCGGGTA CCGGCTGGAC GACCTCGTCG CGATCTTCCG GGACTTCCGC 
TCAGAGCTTC CGCAACCCGC TGAGCACCCG CTCCATCAGG GCCAGGTCGA CCCCGGACGG 
TGA 

 

Protein sequence

MPGTAAFGLA PGGSAPDPGP LPDLLAPGLS ALLCGINPGG RSAVTGHHYA GPGNRFWRVL 
HLAGFTPRLL APSEQALLLG FGIGLTNLVA RPTARAAELG SAELVAGAGR LAGLVERHRP 
GAVGVVGVSA YRVAFRRPRA VVGPQDVELA GAPLWVLPNP SGLNAGYRLD DLVAIFRDFR 
SELPQPAEHP LHQGQVDPGR