Gene Amir_1680 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1680 
Symbol 
ID8325865 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp1836554 
End bp1837534 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content69% 
IMG OID644942230 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003099475 
Protein GI256375815 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.473692 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCCAGG TCCTCAAGCG CATCGCCTTC TACGCTTTCA CCGCGTGGGC CGCGCTGACC 
ATCAACTTCT TCATCCCCCG GCTCATCCCC GGCGACCCGG TCCAGGCCCT GATCACCAAG 
TCCAGGGGCC AGATGACCAC CGAGGCCGTC GAGTCGCTGT ACATCCTCTT CGGGCTGGAC 
AAGGAGTCCA GCCTCGTCGA GCAGTACTTC CGCTACCTCG GCCAGATCGC CACCGGCGAC 
CTCGGCATGT CCTTCACCTT CTTCCCGACC CCGGTGTCGG AGGTGATCAG CGGCGGCCTG 
CCGTGGACCG TCGGGCTGGT CGGCGTCACC ACGGTGCTCG GCTTCCTGCT CGGCACCGCG 
CTCGGCACGG TCGTCGGCTG GCGGCGCGGC TCCCTCGCGG ACCTGCTGAT CCCGGTCACC 
ACGTTCCTGT CCTCGATCCC GTACTTCTGG CTGGGCCTGC TCGCCATCGC CCTGCTCGCC 
GGTCCGGGCA GCTTCTTCCC GGCGTCCGGC GCGTACGAGA TCGGCCTGGT GCCGAACCCG 
GACCTGGAGT TCGTCGGCAG CGTGCTGCGG CACGGCCTGC TGCCCGCGCT GACGATCCTG 
GTGTCGTCCA TGAGCGGCTG GATCCTCAGC ATGCGCAACA TGATGGTGAC GGTCTCCTCG 
GAGGACTACG TCACCGTCGC GCACGCCAAG GGCCTCACCG ACCGGCGCGT CATGGTCGGC 
TACGCCGCCC GCAACGCCCT GCTGCCCAAC GTCTCCGGCT TCGCGCTCTC GCTCGGCTTC 
ATCGTCGGCG GCACGCTGCT GGTGGAGATC GTGTTCTCCT ACCCCGGCCT CGGGCTGCTG 
CTGTTCCAGG CGGTCGGCGC CAAGGACTAC CCGCTCATGC AGGGCATCTT CCTGATGATC 
ACGCTGTCCG TGCTGGCGGC CAACTTCCTG GCCGACCTCG CCTACCTCGC GCTCGACCCG 
CGCACCCGAC GGGAGGGCTG A
 
Protein sequence
MSQVLKRIAF YAFTAWAALT INFFIPRLIP GDPVQALITK SRGQMTTEAV ESLYILFGLD 
KESSLVEQYF RYLGQIATGD LGMSFTFFPT PVSEVISGGL PWTVGLVGVT TVLGFLLGTA 
LGTVVGWRRG SLADLLIPVT TFLSSIPYFW LGLLAIALLA GPGSFFPASG AYEIGLVPNP 
DLEFVGSVLR HGLLPALTIL VSSMSGWILS MRNMMVTVSS EDYVTVAHAK GLTDRRVMVG 
YAARNALLPN VSGFALSLGF IVGGTLLVEI VFSYPGLGLL LFQAVGAKDY PLMQGIFLMI 
TLSVLAANFL ADLAYLALDP RTRREG