| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1548 |
|---|
| Symbol | |
|---|
| ID | 8325732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 1707050 |
|---|
| End bp | 1708294 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644942098 |
|---|
| Product | 3'-5' exonuclease |
|---|
| Protein accession | YP_003099344 |
|---|
| Protein GI | 256375684 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.582452 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACGTAC CCGCCGACGA GCGAACCGAT CCGACCGGTG CACAGCCGGT CCCGCTGACG
GAACCCGCTG ACGGGGTTCC GCCGGTGGTG GCCGACTCCT CGGCACTCCG GCGAGCAGCT
GACGCGCTCG CCGGGGCCGA GGGCCCGGTC GCGGTGGACA CCGAGCGAGC CTCGGGCTAC
CGCTACTCGC AACGCGCTTA CCTGGTGCAG CTGCGCCGGG AAGGCGCCGG GACCGTGCTG
GTCGACCCGA TCGCCCTTGG CGGTCGGTTG GACCCGCTGG TCGAGGCGCT CGAAGGGACC
GAGTGGGTGC TGCACGCGGC GTCGCAAGAC CTGCCGTGCC TCGCCGAACT GGGTCTCACA
CCGAGCGCGT TGTTCGACAC CGAGCTGGCG GGCAGGCTGG CCGGTTTCGA ACGGGTGGCA
CTCGGCACGC TCGTCGAGCT GCTGCTGGGC TACAGGTTGG AGAAGGGGCA CGGCGCGGCC
GACTGGTCGC GCCGTCCCCT CCCCGCCGAC TGGCTCAACT ACGCGGCGCT CGACGTCGAG
CTGCTGGTTC AGCTGCGCGA CGTGCTCGAG GAAGAACTGA GGCAGCAGGG CAAGCTGGAG
TGGGCTCTGG AGGAGTTCGA CGCCGCCAGG ACCGCGCCGC TTCCCAAACC GAGGGCGGAG
CCTTGGCGCC GCACCTCGGG GATCCACCGC ATCCGCAGCA CCAGGCAGCT CGCCGCTGTC
CGGTCGCTGT GGGAGACCCG CGACGCCCTG GCGCGCGAGC GGGACCTGGC CCCTGGCCGG
GTGCTGCCCG ACAGCGCGCT GGTCGACGCG GCGACCCGCA ACCCGGCCGA CGAGGCCGCG
CTGCTGGCGC TCCCGGTGTT CCGGGGACGC GCCCAGCGGC GCATGGCCGG GACGTGGATG
GGCGCGCTGC GCAAGGCGGC GGCGCTGCCC AGGGCGGAGC TGCCTGAGAC CGCCCAGCAC
CACGACGGGC CTCCACCGGC GAACCGCTGG GCCGACAAGG ACCCGGCGGC GGCAGCACGG
CTCGCGGCGG CGCGCACCGC CCTGGCCGAG GTCGCCGAGG CGAACACCCT GCCGGTGGAG
AACCTGCTGC TGCCAGACCT GGTGCGCCGC ACCTGCTGGC AGCCGCCGTC GGACACCTCG
CTCGACGGGG TCACGGCGGC GCTCCGCGAA GGCGGGGCGC GCGAGTGGCA GATCGGCTTG
ACGGCACGGG CGCTCAGCGA GGCCCTGGCC GCCACTCCGG GCTGA
|
|---|
| Protein sequence | MDVPADERTD PTGAQPVPLT EPADGVPPVV ADSSALRRAA DALAGAEGPV AVDTERASGY
RYSQRAYLVQ LRREGAGTVL VDPIALGGRL DPLVEALEGT EWVLHAASQD LPCLAELGLT
PSALFDTELA GRLAGFERVA LGTLVELLLG YRLEKGHGAA DWSRRPLPAD WLNYAALDVE
LLVQLRDVLE EELRQQGKLE WALEEFDAAR TAPLPKPRAE PWRRTSGIHR IRSTRQLAAV
RSLWETRDAL ARERDLAPGR VLPDSALVDA ATRNPADEAA LLALPVFRGR AQRRMAGTWM
GALRKAAALP RAELPETAQH HDGPPPANRW ADKDPAAAAR LAAARTALAE VAEANTLPVE
NLLLPDLVRR TCWQPPSDTS LDGVTAALRE GGAREWQIGL TARALSEALA ATPG
|
|---|
| |