Gene Amir_1509 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1509 
Symbol 
ID8325689 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp1667194 
End bp1668501 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content70% 
IMG OID644942056 
ProductRNA polymerase sigma factor 
Protein accessionYP_003099306 
Protein GI256375646 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCAGCCG CGAAGACGAC TCAGGCAGCG AAGGCTGATG CCGAGGAGAC GCCCAAGGCC 
ACCTCGGCGA GGAAGGCTCC GGTGAGGAAG CCGGCAGCGA AGACCGCCGC GGCGGGCAAG
ACGACAGCAC GCGCGCCGCG CAAGACTGCC GCCAAGGCCG CCGCGGGTTC CCCCAAGGCG
AAGAAGGCCG GCGAGGGCGA CGAGCCCGAG GAGATCGAGG GCGCCCCCGG CGACGAGGAC
CTCGTCGACG AGGTCGAGCT GATCGACGAG CCCGTCGAGG AGGAGCCCGC CGAGGAGGAG
AACGCCAAGC CCGGCGAGGG CGACTTCGTC TGGGACGAGG AGGAGTCGGA GGCGCTGCGG
CAGGCCCGCA AGGACGCCGA GCTCACCGCC TCGGCCGACT CGGTCCGCGC CTACCTCAAG
CAGATCGGCA AGGTCGCGCT CCTCAACGCG GAGGAGGAGG TCGAGCTCGC CAAGCGCATC
GAGGCCGGCC TCTACGCCGC CGAGCGGCTG CGCCGGGCCG AGGACGAGAG CGAGAAGCTC
ACCCCGCAGA TGCGGCGCGA CCTGCGCTGG ATCGTCCGCG ACGGCGAGCG CGCCAAGAAC
CACCTGCTGG AGGCCAACCT CCGCCTGGTG GTGTCGCTGG CCAAGCGCTA CACCGGTCGC
GGCATGGCGT TCCTGGACCT GATCCAGGAG GGCAACCTGG GTCTGATCCG CGCGGTCGAG
AAGTTCGACT ACACCAAGGG CTACAAGTTC TCCACGTACG CCACGTGGTG GATCCGCCAG
GCGATCACCC GCGCGATGGC CGACCAGGCC CGCACCATCC GCATCCCGGT GCACATGGTC
GAGGTCATCA ACAAGCTCGG CCGCATCCAG CGCGAGCTGC TCCAGGACCT GGGCCGCGAG
CCCACGCCGG AGGAGCTGGC GAAGGAAATG GACATCACGC CCGAGAAGGT GCTGGAGATC
CAGCAGTACG CGCGTGAGCC CATCTCGCTG GACCAGACGA TCGGCGACGA GGGCGACAGC
CAGCTCGGTG ACTTCATCGA GGACTCCGAG GCCGTGGTGG CCGTGGACGC GGTGTCGTTC
ACGCTGCTCC AGGACCAGCT GCAGTCGGTG CTGGCGACGC TGTCCGAGCG CGAGGCGGGC
GTGGTCCGGC TCCGCTTCGG CCTGACCGAC GGCCAGCCGC GCACGCTGGA CGAGATCGGC
CAGGTCTACG GGGTCACCCG CGAGCGGATC CGGCAGATCG AGTCGAAGAC GATGTCCAAG
CTGCGCCACC CGTCGCGCTC GCAGGTGCTG CGCGACTACC TGGACTAG
 
Protein sequence
MAAAKTTQAA KADAEETPKA TSARKAPVRK PAAKTAAAGK TTARAPRKTA AKAAAGSPKA 
KKAGEGDEPE EIEGAPGDED LVDEVELIDE PVEEEPAEEE NAKPGEGDFV WDEEESEALR
QARKDAELTA SADSVRAYLK QIGKVALLNA EEEVELAKRI EAGLYAAERL RRAEDESEKL
TPQMRRDLRW IVRDGERAKN HLLEANLRLV VSLAKRYTGR GMAFLDLIQE GNLGLIRAVE
KFDYTKGYKF STYATWWIRQ AITRAMADQA RTIRIPVHMV EVINKLGRIQ RELLQDLGRE
PTPEELAKEM DITPEKVLEI QQYAREPISL DQTIGDEGDS QLGDFIEDSE AVVAVDAVSF
TLLQDQLQSV LATLSEREAG VVRLRFGLTD GQPRTLDEIG QVYGVTRERI RQIESKTMSK
LRHPSRSQVL RDYLD