| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1509 |
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| Symbol | |
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| ID | 8325689 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 1667194 |
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| End bp | 1668501 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644942056 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_003099306 |
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| Protein GI | 256375646 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCAGCCG CGAAGACGAC TCAGGCAGCG AAGGCTGATG CCGAGGAGAC GCCCAAGGCC
ACCTCGGCGA GGAAGGCTCC GGTGAGGAAG CCGGCAGCGA AGACCGCCGC GGCGGGCAAG
ACGACAGCAC GCGCGCCGCG CAAGACTGCC GCCAAGGCCG CCGCGGGTTC CCCCAAGGCG
AAGAAGGCCG GCGAGGGCGA CGAGCCCGAG GAGATCGAGG GCGCCCCCGG CGACGAGGAC
CTCGTCGACG AGGTCGAGCT GATCGACGAG CCCGTCGAGG AGGAGCCCGC CGAGGAGGAG
AACGCCAAGC CCGGCGAGGG CGACTTCGTC TGGGACGAGG AGGAGTCGGA GGCGCTGCGG
CAGGCCCGCA AGGACGCCGA GCTCACCGCC TCGGCCGACT CGGTCCGCGC CTACCTCAAG
CAGATCGGCA AGGTCGCGCT CCTCAACGCG GAGGAGGAGG TCGAGCTCGC CAAGCGCATC
GAGGCCGGCC TCTACGCCGC CGAGCGGCTG CGCCGGGCCG AGGACGAGAG CGAGAAGCTC
ACCCCGCAGA TGCGGCGCGA CCTGCGCTGG ATCGTCCGCG ACGGCGAGCG CGCCAAGAAC
CACCTGCTGG AGGCCAACCT CCGCCTGGTG GTGTCGCTGG CCAAGCGCTA CACCGGTCGC
GGCATGGCGT TCCTGGACCT GATCCAGGAG GGCAACCTGG GTCTGATCCG CGCGGTCGAG
AAGTTCGACT ACACCAAGGG CTACAAGTTC TCCACGTACG CCACGTGGTG GATCCGCCAG
GCGATCACCC GCGCGATGGC CGACCAGGCC CGCACCATCC GCATCCCGGT GCACATGGTC
GAGGTCATCA ACAAGCTCGG CCGCATCCAG CGCGAGCTGC TCCAGGACCT GGGCCGCGAG
CCCACGCCGG AGGAGCTGGC GAAGGAAATG GACATCACGC CCGAGAAGGT GCTGGAGATC
CAGCAGTACG CGCGTGAGCC CATCTCGCTG GACCAGACGA TCGGCGACGA GGGCGACAGC
CAGCTCGGTG ACTTCATCGA GGACTCCGAG GCCGTGGTGG CCGTGGACGC GGTGTCGTTC
ACGCTGCTCC AGGACCAGCT GCAGTCGGTG CTGGCGACGC TGTCCGAGCG CGAGGCGGGC
GTGGTCCGGC TCCGCTTCGG CCTGACCGAC GGCCAGCCGC GCACGCTGGA CGAGATCGGC
CAGGTCTACG GGGTCACCCG CGAGCGGATC CGGCAGATCG AGTCGAAGAC GATGTCCAAG
CTGCGCCACC CGTCGCGCTC GCAGGTGCTG CGCGACTACC TGGACTAG
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| Protein sequence | MAAAKTTQAA KADAEETPKA TSARKAPVRK PAAKTAAAGK TTARAPRKTA AKAAAGSPKA
KKAGEGDEPE EIEGAPGDED LVDEVELIDE PVEEEPAEEE NAKPGEGDFV WDEEESEALR
QARKDAELTA SADSVRAYLK QIGKVALLNA EEEVELAKRI EAGLYAAERL RRAEDESEKL
TPQMRRDLRW IVRDGERAKN HLLEANLRLV VSLAKRYTGR GMAFLDLIQE GNLGLIRAVE
KFDYTKGYKF STYATWWIRQ AITRAMADQA RTIRIPVHMV EVINKLGRIQ RELLQDLGRE
PTPEELAKEM DITPEKVLEI QQYAREPISL DQTIGDEGDS QLGDFIEDSE AVVAVDAVSF
TLLQDQLQSV LATLSEREAG VVRLRFGLTD GQPRTLDEIG QVYGVTRERI RQIESKTMSK
LRHPSRSQVL RDYLD
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