Gene Amir_1378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1378 
Symbol 
ID8325558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp1519203 
End bp1520939 
Gene Length1737 bp 
Protein Length578 aa 
Translation table11 
GC content77% 
IMG OID644941926 
Producthypothetical protein 
Protein accessionYP_003099176 
Protein GI256375516 
COG category[L] Replication, recombination and repair 
COG ID[COG0322] Nuclease subunit of the excinuclease complex 
TIGRFAM ID[TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCCGGGG TTACCGTGCC CGGAATGCCG ACCACGCCGC CCGCGCAGCT GTCGTTCGAC 
GAGCTGGGCA CCCCGCTGCG GGAGACCACG TTCGTCGTCT TCGACCTGGA GACGACCGGT
CCGCGCGCGG CCGAGGACGG CATCACCGAG ATCGGCGCGG TGAAGGTGCG CGGCGGGCGG
GTGATCGGCG AGTTCGGCAC GCTCGTCGAC CCGGAGCGCG GCATCCCGCC GCAGATCGTC
GCGCTGACCG GCATCACCCA GAACATGGTG ACCGGCGCGC CCGTGCTCGC CTCGGTGCTG
CCCGCGTTCC TGGAGTTCGC CGAGGGCGCG GTGCTGGTGG CGCACAACTC CGGGTTCGAC
GTGGGGTTCA TGAAGGCCGC CTGCGAGCGG CACGGCTACG CCTGGCCCAA GCCGCCGGTG
GTGTGCACGG TCAAGCTGGC CAGGCGGGTG CTCAGCCGCG AGGAGGCGCC CAGCTGCAAG
CTGTCCGCGC TGTCCGCCCT GTTCGGGGTG CCCGAGGCGC CGAACCACCG GGCGCTGGTC
GACGCCCGCG CCACCGTGGA GGTGCTGCAC CGGCTGCTGG AGCGGGTCGG GTCGGTGGGC
GTGCACTCGC TGGAGGAGCT GCTGGCGTAC CTGCCGGACG TGAGCCCGCA GCAGCGCCGC
AAGCGCTCGC TGGCCGCCGA CCTGCCGTCC GCGCCGGGCG TGTACCTGTT CCGGGGGCCC
AGCGAGGAGG TGCTGTACGT CGGCACGGCC TCGGACCTGC GCAGGCGGGT GCGGCAGTAC
TTCACCGCCT CCGAGACCCG GCACCGGCTG CGCGAGATGG TGGCCCTGGC GGTGCGGGTG
GACTGGGTGG AGTGCGCGCA CCCGCTGGAG GCGCAGGTGC GGGAGCTGCG GCTGATCGCC
GCGCACCGGC CCGCCTACAA CCGCCGGTCG AAGAACACCG CCTCCTGGTG GCTGGCGCTG
ACCGACGAGG CGTTCCCGAG GCTCTCGGTG GTGCGGACGG CCCGCGAGGG CGCGCTGGGA
CCGTTCCCGA CCAGGCGGGC GGCGGACGCG GCGGCGGAGG CGCTGCTGGA GGCCGTGCCG
CTGCGGGCGT GCGCCCAGCG CATCCCGGCG CGCGGGGCGT CGGGCACGCC GTGCGCGCTG
CTGGAGATGG GGCGCTGCAA GGCCCCGTGC GCGGGGCTGC AGGAGGTCGA CGACTACGCG
GACGCGGTGG CGCGGGCTCG GGCGCTGATC GCCGGGGAGT CCACCGAGGC GCTCGGCGGC
GCGGCGGCCA GGCTGGGCGA GCTGGCGCTG GAGGAGCGGT TCGAGGAGGC GGCCCTGCGG
CGGGACCGGC TGGCCGGGCT GGTGCGGGCG CTGGACCGGG GGCAGCGGCT GGCCGCGCTC
GCCGCGGTGG AGGAGCTGGT GGCGGCGCGG CCGGACGGCG CGGGCGGCTG GTGGTTCGCG
GTGGTGCGGC ACGGCAGGCT GGCCAGCGCC GGGGTGGCCC CGCGCGGGGT GCCGCCGATG
CCGGTGGTGG ACGCGCTGGT GGCGTCGGCG GAGACGGTGC TGCCCGGCGC GGGCCCGCTG
CTGGGCGGCA GCGCCGAGGA GGTCGGCGTG GTGCTGCGGT GGGTGGAGCA GCCGGGGACC
CGGATGGTGA GCTGCTCGCG CCCGTGGGCG GCGCCCGCGT GGGGCGCGGG GAGCTGGCGG
ACCTGGGTGG GCGTGGCCGA GGCGGGACGC GACCAGTACC GGTTCGAGGG GCACTAG
 
Protein sequence
MSGVTVPGMP TTPPAQLSFD ELGTPLRETT FVVFDLETTG PRAAEDGITE IGAVKVRGGR 
VIGEFGTLVD PERGIPPQIV ALTGITQNMV TGAPVLASVL PAFLEFAEGA VLVAHNSGFD
VGFMKAACER HGYAWPKPPV VCTVKLARRV LSREEAPSCK LSALSALFGV PEAPNHRALV
DARATVEVLH RLLERVGSVG VHSLEELLAY LPDVSPQQRR KRSLAADLPS APGVYLFRGP
SEEVLYVGTA SDLRRRVRQY FTASETRHRL REMVALAVRV DWVECAHPLE AQVRELRLIA
AHRPAYNRRS KNTASWWLAL TDEAFPRLSV VRTAREGALG PFPTRRAADA AAEALLEAVP
LRACAQRIPA RGASGTPCAL LEMGRCKAPC AGLQEVDDYA DAVARARALI AGESTEALGG
AAARLGELAL EERFEEAALR RDRLAGLVRA LDRGQRLAAL AAVEELVAAR PDGAGGWWFA
VVRHGRLASA GVAPRGVPPM PVVDALVASA ETVLPGAGPL LGGSAEEVGV VLRWVEQPGT
RMVSCSRPWA APAWGAGSWR TWVGVAEAGR DQYRFEGH