Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_1178 |
Symbol | |
ID | 8325355 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | + |
Start bp | 1316811 |
End bp | 1320125 |
Gene Length | 3315 bp |
Protein Length | 1104 aa |
Translation table | 11 |
GC content | 79% |
IMG OID | 644941725 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003098978 |
Protein GI | 256375318 |
COG category | [R] General function prediction only |
COG ID | [COG3899] Predicted ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00127631 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGCGCAT CGAGCCCCGC GCGGCAGGTG GACCCGAGAA CGCGGGGCGC GCACCGCCCG CCGCTGGTCG GCAGGGCGGG GGAGCTGCGC GCCTTCCGGG CGCTGCTGCG CGCCGCGTCG GCCGGGCGCA CCGTCGGGGT GCTGGTGGAC GGCGAGTTCG GCTCCGGCAA GTCCGCGCTG CTGGCCGAGG TCGCCGCGCA GGCCCGCGAC CTGGGCTTCA CCGCCGCGTC CGCGGTCGCC ACCCGGCTGG AGAGCGAGCT GCGCGGCGCC GTCGTCGGGC AGCTCGCCGA GGACCTGCTG GACGGCCCCG GTGACGTGGC GCCCTCGCTG GAGGCGTTCC TGCAGCTGGT GCGCGCCTCG GTCGAGCGCG CCCCGCTGCT GCTCGTGGTC GACGACGCGC ACGTCGCCGA CGCCTGGTCC CTGCGCTGCC TGGCCTACCT GCTGCGCAGG CTCCGCGACC GCCCCCTGCT GGTCGTGCTG TCCTCGGCGA CGGGCCAACC GCCCGCCGCC GACCTGCTGC TGTCCGAGCT GCTGCCCGAG GACCACCACC TGCTGCGCCT GCCCCGCCTG ACCCCCGACG CGGTCGCCGA CCTGCTGGCG GGCGTCCTGC CCGCCCCCCT CCCCGAGGGC CTGGCCGCGG CGGCCCACGA GGCCACGGCG GGCAACCCCA GACTGCTGGA GTCCCTGGTC GCGGTCCTGC GCGCCCGCGC GGCCCTCGGA CCGAAGGCCC GGATCACCCG CACTCCGGGC CCCGCAGGTT TCGGTGCCCA GGCGCCCGGC CGTTCCGGCG CGGACACCCC CGGTCGTCCA GGTCCGGGGG ACACCGCCGG AGGTGGTCCC GGTTCCGGGC CTGCGGCTCG CGGTCGTTCC AGCGGTGCCG TACCCCAGGG CGGTGCCACG CCCGGCGACG CCGTCCGGAG CTCCGTCGAT CCCGGCCCTG GCACAGGAGT CCCGGCTGTC GTCGGCCCCG GCGCCACGCC GCCGGGCCGT GCCGGGTTCG ATCCCGCGTC GTTCGCCCCC GCCGAGTTCG ACCCGACTGG GTTCGACCCG ACTGGACTCG CCCCCGGCAC GCCCGCTGCC TTCGACGTCG CCGCGCTCGT CCCGTCCGGG TTCGGCTCCG CCTCGCTCGT GCCCGCCGCG TTCGGCGTCT CCGCACTCGC CACCGACCTG GATCCCGCAG ACCTCGACCC CGCCGCCCTG GACCCCGCCG AGGTCGCCGG GCTCGCCGCG CCCGAGCTGG GGGAGCTGCT GCGCCTGCGC CTGCGGGTCC GACCCGGCGC GGCCGAGGTG GTGCGGGCGA CCGCCGTCCT CGGCGAGGAC GCCACCGTCG ACCGGGTCGC CGAGCTGGCA GGCGTCGAGC ACCGCGAGGT GCTCGCCCTG GTCGACGCCC TGGTCCGGCT GCGCCTGCTC CGCGACGGCA CCCCGCTCGC CTTCAACCAC CCCTACCTGC GGGCCTGCGT GCTCGCCGAC CTGCCGGTCG CCACCCGCGC CGCCGACCAC GCCCGCGCCG CCTCGGCGCT CGCCGAGGCC GGGGAACCGG CCAGGCGGGT CGCCGCGCAC CTGCGCCAGG CCCACGACGT GCCGCTGCCC TGGGGCGTCC CGGTGCTGCG CGAGGCCGCC CGCTCGGCGC TGCGCGCGGG CGACCCGGCC GAGGCCCGCG CCTGTCTGGA GCGCGCGCTG CGGGAGCGCG CCGCGCCCGC CGAGCGCCTG GGCGCGCGCC TGGAGCTGGT GCACGCGGTG TTCCTCGCCG ACCCGGCCGA GGGCGCGTCG CTGCTGCGCG AGAGCCTCGT CCTCGCCGAC GACACCGGCC TGGCCGCCGA CCAGGCCGCC CAGCTGCTGC TGCGGCTGTG CCGCCCGGTC GACGCCCGGT TCGCCCTCGC CCTCGGCCCG CAGCTGGTCG CCAGGCTCGG CCCCGCCGAC CACGACCGCT CGTGGCGGCT GCGCGCCCTG TGCTTCCTCG CGGGCGCGGG CAACAACCCC GGCCTGGCGC TGCGCGCGGG CGTCCTGCTG CGCGAGCTGG AGGCCGAGCC GCCCACGTCG CCCGAGCTGC GGCAGACCCG CTCCGCCCTG CTCGCGCTCG GCCACGCCCT GCGCGGCGAC TCGGCGGCGC GGGCCGCCGG GCACGCCGAG CTGGCGCTGA CCGGACCGGA CACCGGGGTG CTCACCCGGC CGTTCGCGTT CGCCGTCGCC ACCTGCTTCC TCGCCGACTC GCCCCGGCTG TCCGAGGGGC TGCGGCACGC GCTCGGCTCC CGCGCCGAAC CCCGCGACCA CCACCTCGAC CGGGGCGCGG CGCTCGCGCT CGCGCAGGGC CTGCACCACC TGGCCACCGG CGACCTCGTG CGCGCCAACA CCTTCCTGAA GTGGCAGCTG CGGCTGTTCG CCGAGCAGAG CGCCCCGCCG CGCGACCGGC TGGGCGACCG GCCCGCTGAC GCGGGGGAGT GGGCAGGCCC GGTCGAGGAC TGCCCGATGG CGGTGCTCTG CGCGGCCAGG CTCACCGAGG CGCTGGTCGA CCTCGGCCGG TTCGACGAGG CGCGCGAGCT GCTGGCCAAG CACGGCCTCA CCGACCGGCT GCCCGAGGTG TTCGGCCACA ACACCACCCT GTGGGCGCGC GGCAGGCTCA AGCTCGCGGG CGGTGACGCC GAGGGCGCGC TGACCGACGC GCGCGAGTGC GGCAGGAGGC TGGCCGCCGC CCAGCTCGGG TCGGCCCCGC TGCTGCCGTG GCGACCGCTG GCCGTGCGCG CCCTGCTCGC GCTGGGCCGC CGCGACCAGG CGGTGCGGCT GGCCGGGGAG GAGCTGGCGG TCGCCCGCCG CTGGGGCGCC CCGAGGGCGC TCGGCGTCGC GCTGCTCGCG GTGGGCCTGA CCAGCGAGGA CGACGCCGGG ACCCGCGCGC TCGCCCAGGC CGTCCAGCAC CTGGAGGGCA CCACCGCCCG GCTCGCGCTG GCCGAGGCGC TGTGCGAGCT GGGCGCGCGG CTGCGCAGGC GCGGCAGGCC CGAGCGGGCC ATCCCGCACC TGCGGCGGGC CGTGGAGCTG AGCGCGGCCT GCGAGGCCAA ACCGCTCATC GCGCGCGCGG GAGAGGAGCT GCGGGCCTGC GAGCCGACCA CCGTCCAGGG CACCGAGCAC GGCCTGACCA GGCAGGAGGT CCGGGTCGCC GGCATGGCCG CGCAGGGCCT GACGAACCGG CAGATCGCCG AGGCGCTCTT CCTCACCCGG CGCACCGTCG AGCTGCACCT GTCCGGGGCC TACCGCAAGC TCGGCATCGC GGGCCGCGCC GACCTGCCCG CCGCCCTCAC TCCACCGGTT CCCCCGGCAG GGTGA
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Protein sequence | MSASSPARQV DPRTRGAHRP PLVGRAGELR AFRALLRAAS AGRTVGVLVD GEFGSGKSAL LAEVAAQARD LGFTAASAVA TRLESELRGA VVGQLAEDLL DGPGDVAPSL EAFLQLVRAS VERAPLLLVV DDAHVADAWS LRCLAYLLRR LRDRPLLVVL SSATGQPPAA DLLLSELLPE DHHLLRLPRL TPDAVADLLA GVLPAPLPEG LAAAAHEATA GNPRLLESLV AVLRARAALG PKARITRTPG PAGFGAQAPG RSGADTPGRP GPGDTAGGGP GSGPAARGRS SGAVPQGGAT PGDAVRSSVD PGPGTGVPAV VGPGATPPGR AGFDPASFAP AEFDPTGFDP TGLAPGTPAA FDVAALVPSG FGSASLVPAA FGVSALATDL DPADLDPAAL DPAEVAGLAA PELGELLRLR LRVRPGAAEV VRATAVLGED ATVDRVAELA GVEHREVLAL VDALVRLRLL RDGTPLAFNH PYLRACVLAD LPVATRAADH ARAASALAEA GEPARRVAAH LRQAHDVPLP WGVPVLREAA RSALRAGDPA EARACLERAL RERAAPAERL GARLELVHAV FLADPAEGAS LLRESLVLAD DTGLAADQAA QLLLRLCRPV DARFALALGP QLVARLGPAD HDRSWRLRAL CFLAGAGNNP GLALRAGVLL RELEAEPPTS PELRQTRSAL LALGHALRGD SAARAAGHAE LALTGPDTGV LTRPFAFAVA TCFLADSPRL SEGLRHALGS RAEPRDHHLD RGAALALAQG LHHLATGDLV RANTFLKWQL RLFAEQSAPP RDRLGDRPAD AGEWAGPVED CPMAVLCAAR LTEALVDLGR FDEARELLAK HGLTDRLPEV FGHNTTLWAR GRLKLAGGDA EGALTDAREC GRRLAAAQLG SAPLLPWRPL AVRALLALGR RDQAVRLAGE ELAVARRWGA PRALGVALLA VGLTSEDDAG TRALAQAVQH LEGTTARLAL AEALCELGAR LRRRGRPERA IPHLRRAVEL SAACEAKPLI ARAGEELRAC EPTTVQGTEH GLTRQEVRVA GMAAQGLTNR QIAEALFLTR RTVELHLSGA YRKLGIAGRA DLPAALTPPV PPAG
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