Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_1073 |
Symbol | |
ID | 8325247 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | + |
Start bp | 1190138 |
End bp | 1192399 |
Gene Length | 2262 bp |
Protein Length | 753 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 644941619 |
Product | bifunctional preprotein translocase subunit SecD/SecF |
Protein accession | YP_003098875 |
Protein GI | 256375215 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0341] Preprotein translocase subunit SecF [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR00966] protein-export membrane protein SecF [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0361267 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGCGCC CAGCCGCGCG GCGGGAACTG CTCGTCCGGG GACTGCTGTC CCTGGGCGTT CTCGCCGCGT CCGCCTTCCT CCTGCTCACC ACCGCCCCCC GCCTCGGCCT CGACCTGCGC GGCGGGACGC AGATCGTGCT CGAGACGCCC GACGGGAGCG CCTCCGAGGC CACCGACCGG GCCATGGAGG TGCTGCGCCG CCGCGTCGAC GAGCTCGGCG TCGCCGAACC CGTGCTCGCC CGCTCCGGCG ACCGCCGCAT CGTGGTCGAG CTCCCCGGCG TCCAGGACCC GGCCGAGGCC GTCGAGGTCC TCGGGCGCAC CGCGCAGCTC TCCGTCCACC CCGTCACCGG CGCCGGTGGC ACGCCCTCCC CGGCCGGGAT CGGCATCGCG CTCGGTGACA CCGTCATGAC CGGTGACGGC ATCAAGAACG CCCAGGCCTC GCCCGCGCAG GGCGGCATCG GGTGGACCGT CGGCATCGAG TTCCAGGGCG ACGCCCCCGC CGCCTGGCAG CGGGTCAGCG CCGAGGCGGC CTGCGCGCCA CCGGGCGACC CGCGCAGGCA GATCGCGTTC CGGCTCGACG ACGAGGTGAT CTCCTCGCCG CAGGTCGACC CGTCCGTCGG CTGCGGCACC GGCATGATCG GCGGCAGCAC GCAGATCACC GGCTCCTTCA CCCAGGACGA GGCCGAGGAC CTGGCGCTGG TGATCCGCTC CGGCGCGCTG CCCGTGCCGG TGGACGTGGT CGAGCAGCGC ACCGTCGGCC CGACGCTCGG CGCCGAGGCC ATCGACGCCA GCGCCCGCGC CGCGATCATC GGCGTCGCCC TGACCGGCCT GTTCCTCATC GGCGTGTACC GGCTCGCCGG CCTGGTCGCG GTGCTCGCCC TCGTCGCCTA CGCCGCCGTG TCCTACGCCG CGCTCCTCGC GATCGGCGCC ACCCTCACCC TGCCGGGCCT CGCCGGGTTC GTCCTCGCGG TCGGCATGGC CGTGGACGCG AACGTGCTGG TGTTCGAGCG CGCCCGCGAG GAGTTCGCCC GCCGCCGCCG GATGCCCCGC TCGGTCGACC TCGGGTTCCG GGGCGCGTTC AGCGCCGTCG CCGACTCGAA CGCCACCACC CTGCTCGCCG CCGGACTGCT GTTCTGGCTG GCGGTCGGCC CGGTCAAGGG CTTCGGCGTG ACGCTGTCCA TCGGCGTCGT GGCCTCGCTG TTCAGCGCGC TCGTGCTCAG CCGCGTCCTG CTCCAGCTGA TCATGCCGGT GCTGGAGCGC CGCCCGCGCT GGAGCGGCCT GCACGACCTC GGCCGGGTGC GCACCTGGCT GACCGGGCGC GGCATCGTGC TGTTCCGGCG CCCGACGCGC TGGCTGGTCG CCGCCGCGCT GATCGCGGTG GCCGCGCTGT CCGGCCTGGC CGTGCGCGGT CTCGACCTCG GCGTGGAGTT CACCGGCGGC CGGATGCTGG AGTTCACCGC CGCCTCCGTC GACACCGGCC GGGTGCGCGA CGCGCTCGCC GACGCCGGTT TCCCGGACGC CGTGGTCGCC ACCTCCGGCG ACAGCGGCGT GTCGGTGCGC ACCGGCCCGA TCGACGAGGC CGCGTCCGCG CGGGTCGGCG AAGCCGTCGA CCGCGCCACC GGCGGCGCGG AGCAGGTCGC CAACGAGCTG ATCGGCCCCA GCCTCGGCGA CGAGCTGCGC CGCAACGCGC TGATCGCGCT GGCCATCGCC GTGGCCGCGC AGCTGGCGTA CCTCGCGTAC CGCTTCGACT GGCGCCTCGG CCTGGCCACG GTGTCCGCGC TGGTCGCCGA CGTGGTCGTG CTCGTCGGCG CGTTCGCCTG GATGGGGAAG ACGGCGGACG GCGTGTTCCT GGCCTCGCTG CTCACCGTGA TCGGCTACTC GGTCAACGAC TCGGTCGTGG TGTTCGACCG GGTCCGCGAG CTGCGCAGGG CCGATCCGAG GCGCGACTAC CCGGAGCTCG TCGGCAGCGC CGTGCTCCAG ACCATCCCGA GGACGGTCAA CACGGGCATC GGCGTCCTGT TCGTCCTGGC CGCGCTGCTC GTGCTCGGCG ACGGCTCGCT CGCCGACTTC GCCACCGCCC TGCTGATCGG CCTGGTCGCG GGCACCGCGT CGACGATCGT CACGGCGGCC CCGATCGCGA TCGCCCTGGA CGGCCGGTGG GGACCGAACG CGGGCCGCGC GAAGCGCCCG ACCCGCAAGC GCGACGTGAA GCAGGACGTG AAGCAGGACG TGAAGCGGAA CGGCGAGCGG GACAAGGGGT GA
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Protein sequence | MPRPAARREL LVRGLLSLGV LAASAFLLLT TAPRLGLDLR GGTQIVLETP DGSASEATDR AMEVLRRRVD ELGVAEPVLA RSGDRRIVVE LPGVQDPAEA VEVLGRTAQL SVHPVTGAGG TPSPAGIGIA LGDTVMTGDG IKNAQASPAQ GGIGWTVGIE FQGDAPAAWQ RVSAEAACAP PGDPRRQIAF RLDDEVISSP QVDPSVGCGT GMIGGSTQIT GSFTQDEAED LALVIRSGAL PVPVDVVEQR TVGPTLGAEA IDASARAAII GVALTGLFLI GVYRLAGLVA VLALVAYAAV SYAALLAIGA TLTLPGLAGF VLAVGMAVDA NVLVFERARE EFARRRRMPR SVDLGFRGAF SAVADSNATT LLAAGLLFWL AVGPVKGFGV TLSIGVVASL FSALVLSRVL LQLIMPVLER RPRWSGLHDL GRVRTWLTGR GIVLFRRPTR WLVAAALIAV AALSGLAVRG LDLGVEFTGG RMLEFTAASV DTGRVRDALA DAGFPDAVVA TSGDSGVSVR TGPIDEAASA RVGEAVDRAT GGAEQVANEL IGPSLGDELR RNALIALAIA VAAQLAYLAY RFDWRLGLAT VSALVADVVV LVGAFAWMGK TADGVFLASL LTVIGYSVND SVVVFDRVRE LRRADPRRDY PELVGSAVLQ TIPRTVNTGI GVLFVLAALL VLGDGSLADF ATALLIGLVA GTASTIVTAA PIAIALDGRW GPNAGRAKRP TRKRDVKQDV KQDVKRNGER DKG
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