Gene Amir_1073 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1073 
Symbol 
ID8325247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp1190138 
End bp1192399 
Gene Length2262 bp 
Protein Length753 aa 
Translation table11 
GC content75% 
IMG OID644941619 
Productbifunctional preprotein translocase subunit SecD/SecF 
Protein accessionYP_003098875 
Protein GI256375215 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0341] Preprotein translocase subunit SecF
[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0361267 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGCGCC CAGCCGCGCG GCGGGAACTG CTCGTCCGGG GACTGCTGTC CCTGGGCGTT 
CTCGCCGCGT CCGCCTTCCT CCTGCTCACC ACCGCCCCCC GCCTCGGCCT CGACCTGCGC
GGCGGGACGC AGATCGTGCT CGAGACGCCC GACGGGAGCG CCTCCGAGGC CACCGACCGG
GCCATGGAGG TGCTGCGCCG CCGCGTCGAC GAGCTCGGCG TCGCCGAACC CGTGCTCGCC
CGCTCCGGCG ACCGCCGCAT CGTGGTCGAG CTCCCCGGCG TCCAGGACCC GGCCGAGGCC
GTCGAGGTCC TCGGGCGCAC CGCGCAGCTC TCCGTCCACC CCGTCACCGG CGCCGGTGGC
ACGCCCTCCC CGGCCGGGAT CGGCATCGCG CTCGGTGACA CCGTCATGAC CGGTGACGGC
ATCAAGAACG CCCAGGCCTC GCCCGCGCAG GGCGGCATCG GGTGGACCGT CGGCATCGAG
TTCCAGGGCG ACGCCCCCGC CGCCTGGCAG CGGGTCAGCG CCGAGGCGGC CTGCGCGCCA
CCGGGCGACC CGCGCAGGCA GATCGCGTTC CGGCTCGACG ACGAGGTGAT CTCCTCGCCG
CAGGTCGACC CGTCCGTCGG CTGCGGCACC GGCATGATCG GCGGCAGCAC GCAGATCACC
GGCTCCTTCA CCCAGGACGA GGCCGAGGAC CTGGCGCTGG TGATCCGCTC CGGCGCGCTG
CCCGTGCCGG TGGACGTGGT CGAGCAGCGC ACCGTCGGCC CGACGCTCGG CGCCGAGGCC
ATCGACGCCA GCGCCCGCGC CGCGATCATC GGCGTCGCCC TGACCGGCCT GTTCCTCATC
GGCGTGTACC GGCTCGCCGG CCTGGTCGCG GTGCTCGCCC TCGTCGCCTA CGCCGCCGTG
TCCTACGCCG CGCTCCTCGC GATCGGCGCC ACCCTCACCC TGCCGGGCCT CGCCGGGTTC
GTCCTCGCGG TCGGCATGGC CGTGGACGCG AACGTGCTGG TGTTCGAGCG CGCCCGCGAG
GAGTTCGCCC GCCGCCGCCG GATGCCCCGC TCGGTCGACC TCGGGTTCCG GGGCGCGTTC
AGCGCCGTCG CCGACTCGAA CGCCACCACC CTGCTCGCCG CCGGACTGCT GTTCTGGCTG
GCGGTCGGCC CGGTCAAGGG CTTCGGCGTG ACGCTGTCCA TCGGCGTCGT GGCCTCGCTG
TTCAGCGCGC TCGTGCTCAG CCGCGTCCTG CTCCAGCTGA TCATGCCGGT GCTGGAGCGC
CGCCCGCGCT GGAGCGGCCT GCACGACCTC GGCCGGGTGC GCACCTGGCT GACCGGGCGC
GGCATCGTGC TGTTCCGGCG CCCGACGCGC TGGCTGGTCG CCGCCGCGCT GATCGCGGTG
GCCGCGCTGT CCGGCCTGGC CGTGCGCGGT CTCGACCTCG GCGTGGAGTT CACCGGCGGC
CGGATGCTGG AGTTCACCGC CGCCTCCGTC GACACCGGCC GGGTGCGCGA CGCGCTCGCC
GACGCCGGTT TCCCGGACGC CGTGGTCGCC ACCTCCGGCG ACAGCGGCGT GTCGGTGCGC
ACCGGCCCGA TCGACGAGGC CGCGTCCGCG CGGGTCGGCG AAGCCGTCGA CCGCGCCACC
GGCGGCGCGG AGCAGGTCGC CAACGAGCTG ATCGGCCCCA GCCTCGGCGA CGAGCTGCGC
CGCAACGCGC TGATCGCGCT GGCCATCGCC GTGGCCGCGC AGCTGGCGTA CCTCGCGTAC
CGCTTCGACT GGCGCCTCGG CCTGGCCACG GTGTCCGCGC TGGTCGCCGA CGTGGTCGTG
CTCGTCGGCG CGTTCGCCTG GATGGGGAAG ACGGCGGACG GCGTGTTCCT GGCCTCGCTG
CTCACCGTGA TCGGCTACTC GGTCAACGAC TCGGTCGTGG TGTTCGACCG GGTCCGCGAG
CTGCGCAGGG CCGATCCGAG GCGCGACTAC CCGGAGCTCG TCGGCAGCGC CGTGCTCCAG
ACCATCCCGA GGACGGTCAA CACGGGCATC GGCGTCCTGT TCGTCCTGGC CGCGCTGCTC
GTGCTCGGCG ACGGCTCGCT CGCCGACTTC GCCACCGCCC TGCTGATCGG CCTGGTCGCG
GGCACCGCGT CGACGATCGT CACGGCGGCC CCGATCGCGA TCGCCCTGGA CGGCCGGTGG
GGACCGAACG CGGGCCGCGC GAAGCGCCCG ACCCGCAAGC GCGACGTGAA GCAGGACGTG
AAGCAGGACG TGAAGCGGAA CGGCGAGCGG GACAAGGGGT GA
 
Protein sequence
MPRPAARREL LVRGLLSLGV LAASAFLLLT TAPRLGLDLR GGTQIVLETP DGSASEATDR 
AMEVLRRRVD ELGVAEPVLA RSGDRRIVVE LPGVQDPAEA VEVLGRTAQL SVHPVTGAGG
TPSPAGIGIA LGDTVMTGDG IKNAQASPAQ GGIGWTVGIE FQGDAPAAWQ RVSAEAACAP
PGDPRRQIAF RLDDEVISSP QVDPSVGCGT GMIGGSTQIT GSFTQDEAED LALVIRSGAL
PVPVDVVEQR TVGPTLGAEA IDASARAAII GVALTGLFLI GVYRLAGLVA VLALVAYAAV
SYAALLAIGA TLTLPGLAGF VLAVGMAVDA NVLVFERARE EFARRRRMPR SVDLGFRGAF
SAVADSNATT LLAAGLLFWL AVGPVKGFGV TLSIGVVASL FSALVLSRVL LQLIMPVLER
RPRWSGLHDL GRVRTWLTGR GIVLFRRPTR WLVAAALIAV AALSGLAVRG LDLGVEFTGG
RMLEFTAASV DTGRVRDALA DAGFPDAVVA TSGDSGVSVR TGPIDEAASA RVGEAVDRAT
GGAEQVANEL IGPSLGDELR RNALIALAIA VAAQLAYLAY RFDWRLGLAT VSALVADVVV
LVGAFAWMGK TADGVFLASL LTVIGYSVND SVVVFDRVRE LRRADPRRDY PELVGSAVLQ
TIPRTVNTGI GVLFVLAALL VLGDGSLADF ATALLIGLVA GTASTIVTAA PIAIALDGRW
GPNAGRAKRP TRKRDVKQDV KQDVKRNGER DKG