Gene Amir_1056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1056 
Symbol 
ID8325230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp1174327 
End bp1174953 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content71% 
IMG OID644941602 
Productoligoribonuclease 
Protein accessionYP_003098858 
Protein GI256375198 
COG category[A] RNA processing and modification 
COG ID[COG1949] Oligoribonuclease (3'->5' exoribonuclease) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0686541 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCGCC TGGTGTGGAT CGACTGCGAG ATGACCGGCC TGGACCTGGG CTCCGACGCC 
CTGATCGAGA TCGCGGCGCT GGTGACCGAC GCGGAGCTGA ACGTCCTCGG CGAGGGCGTC 
GACGTGGTCA TCCACGCCGA CGACGAGGCG CTCGCCGCGA TGCCGGAAGT GGTCGTGAAG 
ATGCACGCCA AGTCCGGCCT CACGGAGGAG GTCCGGCGCT CGACGACGAC GCTCGCCGAG 
GCCGAGGCGC TCGTGCTCGC CTACATCCGC GAGTGGGTGC CCGACGCGCG CACCGCGCCG 
CTGGCGGGCA ACTCGATCGC GACGGACCGG GGCTTCATCG CCCGCGACAT GCCGGAGCTG 
GACGCGCACC TGCACTACCG GATGGTCGAC GTGTCGTCCA TCAAGGAGCT GTGCAGGCGC 
TGGTACCCGC GCATCTACTT CGCGCAGCCC GGCAAGGGCC TGGCGCACCG GGCGCTCGCG 
GACATCGAGG AGTCCATCCG GGAGCTGGCC TACTACCGCC GCACCGCGTT CGTGCCGCAG 
CCCGGCCCGA CCTCGGAGCA GGCGCAGTCG GTGGCCGCCG AACTGCTCGC GGCGGACGGC 
GTGACGCCCG CCGACCGCGT GAAATAG
 
Protein sequence
MDRLVWIDCE MTGLDLGSDA LIEIAALVTD AELNVLGEGV DVVIHADDEA LAAMPEVVVK 
MHAKSGLTEE VRRSTTTLAE AEALVLAYIR EWVPDARTAP LAGNSIATDR GFIARDMPEL 
DAHLHYRMVD VSSIKELCRR WYPRIYFAQP GKGLAHRALA DIEESIRELA YYRRTAFVPQ 
PGPTSEQAQS VAAELLAADG VTPADRVK