Gene Amir_0958 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_0958 
Symbol 
ID8325129 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp1066453 
End bp1069656 
Gene Length3204 bp 
Protein Length1067 aa 
Translation table11 
GC content66% 
IMG OID644941504 
Productprotein of unknown function DUF450 
Protein accessionYP_003098763 
Protein GI256375103 
COG category[V] Defense mechanisms 
COG ID[COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCCCG TCCACCACGA ATCCGCGTTC GGTGACGCGA TCGTCGCCTC GATGATCGAC 
TCCGGCTGGG AGCTTGGCAA GAGCGCCGAC TACCGGGCCG ATCTAGGCCT GGACACCGGC
GAGCTGTTCA CCTTCATCGG CGCCACCCAG GCCGGTGAGT GGGAGGATCT TCTCGACCTC
TACGGCGGCG ACGCCAACGC TGCGCAGGCC GGGTTCACCA AGCGGTTGGA CCAGGCGATC
GCCACCGACG GTGTGCTGCA CGTGCTGCGC AAGGGCGTGA AGGACAGGGG CGTCCGCATC
CGCGTCGCAT ACTTCAAGCC ATCACTCGTC GCCTCCGACG CAGTGCTCAA CGACTACCGC
GCCAACCGGC TGACCGTCGT CCGCGAGCTG GAGTACGCGG CCAAGCAGGC GAACAAGGGG
CACAGGCTCG ACCTCACCCT CTTCCTCAAC GGTATCCCGC TGGCCACGGC AGAGTTGAAG
AACCCGCTCA CCGGGCAGGG CGTGGAACAC GCGAAGGAGC AGTACCGCCA CGACCGCGAC
GCAACCGAGC TGATTTTCTC ACGACGCGTG ATCGCGAACT TCGCCGTCGA CCCAGACTTG
GTCTTCGTAG CCACTGAACT GCGTGGCGCG AAGACCAGGT TCCTACCCTT CAACACCGGC
TCTAACGGCC CCGGACAGCC CGGTGGCGCG GGCAACCCGC CCTCCACCTC CTTCGGCAGG
CACACCACCT CGTACCTGTG GGAGCAGGTC TGGCAATGGG ACAACTGGCT GGACCTGCTG
GAGCGCTTTG TTCATCTGCA CAAGGAAAAG GGCGCTGACG GGCGCGCCAC GAAGAAGGTG
ATCTTCCCTC GGTTCCACCA GTGGGACATC GTGAAGAAGC TGACCACGGA CGCCGCACGG
CGCGGTGCGG GGCACAACTA CCTCTGCATG GCCTCGGCTG GCTCCGGCAA GTCGAACACC
ATCGGCTGGC TCGCGCACCG CCTGTCGTCG CTGCACACGC CCACCGACCC TGCGGAGATC
GACCCGGACG AGCTCTCCGC AGGGCTTGAG CCGGGCACCC CGGTATTCGA CAAGGTCGTC
ATCATCACCG ACCGGCGCAA CCTCGACTCC CAGCTGCGCG AGACGGTCGG CAGCTTCGAG
CAAACCGCCG GCCTGGTGGT GAAGATCGAC GACAAGCACG GAGCGAAGTC GGACCAGCTC
GCCCGCGCGT TGTCACGCGA GCCCGGAAAG ATCATCACGG TCACGCTGCA CACCTTCCCG
GCTCTGCTGG ACTACCTGCG TCGCAACCCC ATCGAGATCA AGGGCAGCAA TTTCGCCATC
ATCGTGGACG AAGCGCACTC CTCCCAGTCC GGTGATGCCG CAACTGCTGT GCGTGCTGCG
CTGCGCGACC TCGGGCTCGA TGCGGACTCC GACGACGCGG GTGCTGTCAC CGCCCAGGCA
GACCAGAACG CCGCCACCGA CGCGAAGCTG CGGAGGAAGG CGCACCAGCG CGGCCAGGCC
GCGAACCTGT CGTACTTCGC GTTCACGGCC ACGCCCAAGG CCAAGACCCT GGAACTCTTC
GGCACGCTGG GCGACACCGG CCCGGACGGC AAGCCCACGT ACCGACCGTT CCACACCTAC
TCGATGCGCC AGGCCATCGA GGAGGGCTTC ATCCTCGACC CGCTGCGCAA CTACGTCACC
TACAACACGT ACTGGAAGCT CGTCAACGAG AACCCGGACG AACGCGAGGT CGACCCGACC
AAGACCAATT CCCTGCTCGC CCGGTACGCG TTCACCCACG AGTCCACCGT GGCGCAGCAG
GCCCAGGTGA TCGTGGAGCA CTTCCGGGCC CACACCTCTG GCCGCCTGGG CGGCCGTGCG
AAGGCGATGG TGGTCACCGC GTCCCGGCAC AGCGCCGTGC AGATGGCACG AGCGATCAAG
AAGTACCTCG GTGACCGCGA GTACGCCGAC CCCGGCGTGC TGGTGGCGTT CTCCGGCACC
CTCACCTACG ACGGTGAGGA GATCACCGAG CCAGGGGAGA ACGGCGGCCT GTCCGAGAAC
GCCCTGCCCA AGGCGTTCGC GTACACGCGC AAGGACGACA AGGTGCTACG TGGCGGTGGG
ACCTCCGCGC AACGGGAGTA CCGCATCCTG GTCGTCGCCG ACAAGTACCA GACCGGCTTC
GACCAGCCGC TGCTGACGAC CATGTACGTG AACAAGAAGC TGATGGGCAT TTCCGCCGTG
CAGACGCTGT CCCGGCTCAA CCGCACCGCC GAGCGCAAGG CGCAGTCAGA TCTGGCCGTG
CTGGACTTCG TCAACGAAGC CGAGCAGATC AAGGACTCAT TCCAGCCGTA CTTCGAAGAC
GCGATGACGC TTCCGTCGGA CCCCAACCTG CTCTACACCG CGCAGAGCAG GGTCATGGCG
CCGGATGTTC TCATCGAGCA GGAGATGCGC GAGTTCGTTG CGGCGTACCT CAGTGCGGAG
GAGAAAGCGG CGGGGTCAGT AGCCAGGTGG GAGAAGCTGC ACGCGGAGCT CTACCGCTAC
CTCGGACCGG CAGTCGCCAG GTTCACCGAG CTCTTGGACC GGGCGGACGA CGACGGCGAA
GACCTGGAGG TCGCGGAGAC CTTCCGCGCG GACCTCAACG ACTACGTGCG GAAGTACGGC
TTCCTCGCGC AGATCATCCC CTACACGGAT CCGGAGCTGG AAAGGCTCTA CCTCTACGGG
CGGCACCTGC TCAACCGGCT GCCGCGGCGC GGTGATGGAG GAGTGGACAT CGGCGAGATC
GACCTCAGCC ACATGCGGGT GGAGAAGACG GGAGAGCACG ACCTCGGACT GACGCCCGAG
GGAACGGGCG AACTGCCGGG CTTCGGCGAC GGCCCCAGCG GGGCGCAGGA GCCAGAGAAG
TCGCCGCTGT CGGAACTGAT CGAACGGTTC AACGCGAAGT ACGGCACCGA GTTCACCGAG
CAGGATGTCG TCACACCGTT CACCGAGGCC GTGGCCGACC CGAAAGTGCG GTTGGCCGCC
GTCAACGACG AGGACAACTT CGGTCACGTC TTCGACGACG TCTTCGAGGA CAAGATGGCC
GAACACGTCG ACACCATCGC CGATCTCGGA CGGCAGTACT TCAGCCACGA CGACAGCTTC
AAGCTTTCGC TGAACCGAAG TGCGCGACGA GCCGCTTGGC GGATGATCCG ACGCGAGGAA
GGCGTGAACG ACGACTTGGC GTGA
 
Protein sequence
MSPVHHESAF GDAIVASMID SGWELGKSAD YRADLGLDTG ELFTFIGATQ AGEWEDLLDL 
YGGDANAAQA GFTKRLDQAI ATDGVLHVLR KGVKDRGVRI RVAYFKPSLV ASDAVLNDYR
ANRLTVVREL EYAAKQANKG HRLDLTLFLN GIPLATAELK NPLTGQGVEH AKEQYRHDRD
ATELIFSRRV IANFAVDPDL VFVATELRGA KTRFLPFNTG SNGPGQPGGA GNPPSTSFGR
HTTSYLWEQV WQWDNWLDLL ERFVHLHKEK GADGRATKKV IFPRFHQWDI VKKLTTDAAR
RGAGHNYLCM ASAGSGKSNT IGWLAHRLSS LHTPTDPAEI DPDELSAGLE PGTPVFDKVV
IITDRRNLDS QLRETVGSFE QTAGLVVKID DKHGAKSDQL ARALSREPGK IITVTLHTFP
ALLDYLRRNP IEIKGSNFAI IVDEAHSSQS GDAATAVRAA LRDLGLDADS DDAGAVTAQA
DQNAATDAKL RRKAHQRGQA ANLSYFAFTA TPKAKTLELF GTLGDTGPDG KPTYRPFHTY
SMRQAIEEGF ILDPLRNYVT YNTYWKLVNE NPDEREVDPT KTNSLLARYA FTHESTVAQQ
AQVIVEHFRA HTSGRLGGRA KAMVVTASRH SAVQMARAIK KYLGDREYAD PGVLVAFSGT
LTYDGEEITE PGENGGLSEN ALPKAFAYTR KDDKVLRGGG TSAQREYRIL VVADKYQTGF
DQPLLTTMYV NKKLMGISAV QTLSRLNRTA ERKAQSDLAV LDFVNEAEQI KDSFQPYFED
AMTLPSDPNL LYTAQSRVMA PDVLIEQEMR EFVAAYLSAE EKAAGSVARW EKLHAELYRY
LGPAVARFTE LLDRADDDGE DLEVAETFRA DLNDYVRKYG FLAQIIPYTD PELERLYLYG
RHLLNRLPRR GDGGVDIGEI DLSHMRVEKT GEHDLGLTPE GTGELPGFGD GPSGAQEPEK
SPLSELIERF NAKYGTEFTE QDVVTPFTEA VADPKVRLAA VNDEDNFGHV FDDVFEDKMA
EHVDTIADLG RQYFSHDDSF KLSLNRSARR AAWRMIRREE GVNDDLA