| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0773 |
|---|
| Symbol | |
|---|
| ID | 8324936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 854283 |
|---|
| End bp | 855362 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644941316 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_003098581 |
|---|
| Protein GI | 256374921 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01900] succinyl-diaminopimelate desuccinylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.743362 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCGGGCG TGGCCGACAC CCTTGACCTC ACCGCCGATC CCGTCACGCT GACCGTCGCG
CTCGTGGACG TGCCGAGCGT CTCGGGCGAC GAGCAGCGCA TCGCCGACCT GGTCGAGCGG
TCCCTGCGCG AGCAGACCGC CCTGGAGGTC GTCCGCTCCG GCAACACCGT CCTGGCCCGC
ACGAACCTCG GCCGCGAGCG GCGCGTCGTG CTCGCGGGCC ACCTGGACAC CGTGCCGGTC
AACGACAACC TGCCCTCCCG CCTGGAGGAC GGCGTGCTGC ACGGCCTCGG CTCGGTGGAC
ATGAAGGGCG GCGACGCGGT CATGCTGGCC CTCGCGGGCA CGCTCACCGA CCCGCGCCAC
GACCTCACGT TCGTGTTCTA CGACTGCGAG GAGGTCGAGG CGAGCCGCAA CGGCCTCGGC
CGGGTCGAGC GCGAGCTGCC CGAGTGGATG AGCGGCGACC TGGCGATCGT GTGCGAGCCG
TCCAACGGCG TCATCGAGGC GGGCTGCCAG GGCACGATCC GGGTGCAGGT GCGCGCCACC
GGCAAGCGCG CCCACACCGC GCGCGGCTGG ATGGGCGTCA ACGCCATCCA CCTCCTCGGC
GACGCGATCG CCCGGCTGCG CGACCACGAG TCGCGGGTCG TGGAGATCGA CGGCTGCACC
TACCGGGAGG GCGTGCAGGC CGTGGGCATC ACCGGCGGCG TCTCCGGCAA CGTCGTGCCG
GACGAGTGCG TGCTGACCGT CAACCACCGC TTCGCCCCCG ACCGCACCCC GGCCCAGGCC
GAGGCGTACC TGCGGGAGCT GTTCGACGGC TACGAGGTCA CCGTCACCGA CTTCGCCGCG
GGCGCCCTGC CCGGCCTGGC CTCGCCCGCC GCGCGCGAGC TGGTCGAGGC GGCGGGCGGC
GCCCCGGTCG CCAAGCTCGG CTGGACCGAC GTGGCCCGCT TCGCCGCGCT CGGCACGCCC
GCCGTGAACT TCGGCCCCGG CGACCCGCTG CTCGCCCACA CGCAGCAGGA GAACGTCCGG
GTGAACGAGA TCGGACACTG CTACGAAGTC CTGTCGCGCT TCCTCAGCGC GATGCCCTGA
|
|---|
| Protein sequence | MPGVADTLDL TADPVTLTVA LVDVPSVSGD EQRIADLVER SLREQTALEV VRSGNTVLAR
TNLGRERRVV LAGHLDTVPV NDNLPSRLED GVLHGLGSVD MKGGDAVMLA LAGTLTDPRH
DLTFVFYDCE EVEASRNGLG RVERELPEWM SGDLAIVCEP SNGVIEAGCQ GTIRVQVRAT
GKRAHTARGW MGVNAIHLLG DAIARLRDHE SRVVEIDGCT YREGVQAVGI TGGVSGNVVP
DECVLTVNHR FAPDRTPAQA EAYLRELFDG YEVTVTDFAA GALPGLASPA ARELVEAAGG
APVAKLGWTD VARFAALGTP AVNFGPGDPL LAHTQQENVR VNEIGHCYEV LSRFLSAMP
|
|---|
| |