| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0572 |
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| Symbol | |
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| ID | 8324731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 626473 |
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| End bp | 631002 |
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| Gene Length | 4530 bp |
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| Protein Length | 1509 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 644941115 |
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| Product | YD repeat protein |
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| Protein accession | YP_003098384 |
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| Protein GI | 256374724 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.442069 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGACAACC CGCTGGTAGC CGCACCCCGG AGCGACACGA CGGCGGTGAC CGGGATCGGG
ATCGCCGAGT CGTCGGTGGA CCTGGCGAAC GGTATCGCGG ACGGGAACTG GGTCGAGGCC
GGGCTCGGGG GTGCTGGGGT CGGGCTGGAA GTGCTGTCGA TGGTGATCGA CCCGGTGGGG
ACGGTCGCCT CGTACGGCGT TGGGTGGCTG ATGGAGCACG TGCAGCCGCT CAAGGAGGCC
CTGGACTGGT TGGCGGGGGA TCCGCCGGTG ATCCGCTCGT TCAGCGAGAC CTGGGGCAAC
GTCGCGGCCG AGGTGAGGGC GGTGGCCGAG GAGCTGGGCG GGCAGGACGC GCCGGGTTGG
GAGGGCGCCG CGGCCCAGGC GTTCCGGGGT GCGAACGCCG AGACGGCCGA CGCGATCGCC
GGGGCGGGGG TGCTCGCGGA GGGCGTGGGC ATCGGCGTGA TGGTGATGGG CGAGGTGGTC
GCGGCGGTCC GGGAGTTGGT CCGTGACCTG GTGGCCGAGC TGGTGGGCAG GCTGATCTCC
TGGGCCCTGG AGGCGGTGGC GACCCTGGGC CTGGCCACGC CGGTGATCGT CGCGCAGGCC
ACCACGGCCA TCTCGCGGAT GTGCTCGCGG ATCGCGGACC TGGTGCGCAA GCTGGTCAGG
ACGATCTCGA ACGTCGCGCC GCGCATCCGC TCGGTGGTCG ACAAGCTGGG CGAGATCATG
CAGAAGCTCG GCCGACTCGG CCGCCGCGCC GACACCCCGT CGGGCCCGGA CACCCCGAAC
CTCGCGGGCG GCAGGCCCGC GACCCCCGAC GCGCCGTCGG GCACGACCAG CCCGTCGGGC
ACGACCAGCC CGTCCGGCAC GACCAGCCCG TCAGGGACGA CCAGCCCGTC CGGCACACCT
GCGCCGTCGA GCACGACCAC GCCGTCCGGG ACGAGTTCCC CAGACCCGGC CCCGACCGGC
ACGTCCCCCG GCGGGACCAC CACGACCAGC GGCGCCGCGC CGAGCCCGGC GAGACCGGAC
AGCGCGACAC CGGACAGCAC GAGCCCCAGC GCGCGCGACC AGGCAGGCGC CGACCCCAAG
GCCTCCGCGC GCCCGACGAG CGGTCGACCC ACCTGCGGTG ACCCCGTCGA CGTCGTCTCC
GGCCAGGTCC TCCTGCCGCA GACCGACGTC GCCCTCGGCG GCGCGCTCCC GCTGCTGCTC
ACGCGCACCC ACCTGTCCGG CCACCGCGCG GGCGCCCGGT TCGGCACGTC GTGGGCCTCC
ACCCTGGACC AGCGGCTCGA GGTGGACGAG GAGGGCGTCT GCTTCGTCAC CGAGGACGGC
ATGGTCCTGC TCTACCCGCA CCCCGGCGCG ACGCCCGTCC TCCCGGTGGA GGGACCGCGC
TGGCCCCTGT CCAGCACCGG CGACGGGGGC TACGAGGTGG TCGACGCGGA GGCGGGGCTC
ACCCGGCGCT TCACCCCGAG CGCGGGCGGG CCGCTGCCCC TCGGCTCCAT CACCGACCTC
AACGGCAACC GCGTCACCGT CGACCACGAC GTCGACGGCG TCCCGACCGA CGTCCGCCAC
TCCGGCGGCT ACCACGTGTC GGTGCGCTCG ACCGGCGGCC TGGTGACCTC GCTCGTGCTC
GCCGGTCCCG AGGACATCAC CCTCATCAGG TACGGCTACG ACGCCGAGCG CAGGCTCACC
GAGGTGGTGA ACTCCTCGGG CGCCGCCCTG CGCTTCTCCT ACGACGACGA CCAGCGCGTC
GTCGGCTGGC AGGACCGCAA CGGCATGTGG TACCGCTACG GCTACGACGA CCGGGGGCGC
TGCGTCCTCA ACGAGGGCGC GGACGACTAC CTCTCCGGGA CGTTCGCCTA CCTCGACGGC
CGCACGGTCT ACACCGACGC GCTGGGCAAC CGGACCGAGT TCCACCTCAA CCGCGCCCAC
CAGGTCGTCC GGGAGGTCGA CGCGGGCGGT GGCGTCGTGG TGTCCGAGTG GGACCGCCAC
GACCGGCTGC TCTCCCGGAC CGACCAGCTC GGCCGCACCA CCACCCACCG CTACGACGAG
GACGGCAACC TGGTCGCGCT CGTCCGCCCG GACGGCCGGG AGTCGACCGC GACCTACGAC
GCGGGCCGGA TGCCGCTCGT GGTCGAGGAC GTGGACGGCG CGGTGTGGCG GCGCGAGTAC
GACCCCAGGG GCAACCTCCT CGCGGTCACC GACCCCTCGG GCGCGCGCAC CCGGTTCGAC
CGGGACGAGC GCGGCAACGC CGTGGCGATC ACCGGCCCGC TCGGCGAGGT CCGCCGGATC
GACTACGACC TCGCGGGCCT GCCCGTCGCG ATCACCGACG CGGAGGGCGG TCGCACCGGC
TACCGGCGCG ACCGGTTCGG CCGCGTGCGC GAGGTGACCG ACCCGCTCGG CTCGACCACC
ACCCTCGGCT GGACGGTCGA GGGCAGGCTC GCCTCCCGCA CCCTCCCCGA CGGCTCGGTG
GAGCGGTGGC GGTACGACGG CGAGGGCAAC CCGGTCGAGC ACGTCGACGC GGCGGGCGCC
GTCTCCCGCA CCGGGTACAC CGGGTTCGAC CAGCCCGCCT GGCACGTCGG CCCGGACGGC
GCGCGGCTGG AGTTCGGCTA CGACCCCAAC CTGCGCCTGA CCTCCGTGGT CAACGCGCGG
GGGCAGGCGT GGACCTACCG CTACGGCCCG ACCGGGGCGC TGGTGGTGGA GACGGACTTC
GACGGCCGGT CCACGACCTA CGTCCACGAC GCCACCGGGC AGCTGACCGC CAAGGTCAAC
GGCGCGGGGG AGCGGATCGC CTACGAGCAC GACGAGCTGG GCAGGCTGCG CGCCAAGCGC
ACGCCCCACG GCGACACCAC CTACGACCAC GACCCGGCGG GGCGGCTGAT CAGGGCGGTC
AGCCGCGACG CGGACGTGCT GGTCGAGCGC GACCTGCTCG GCCGGATCGT CGCAGAGACG
GTCAACGGGC GCACCCTGCG CTCGGAGCAC GACGCGTCGG GCAACCGCGT CCGCAGGGTG
ACCCCGACCG GCGCGGTCAG CGAGTGGGAG CACGACGGGA CGGGCAGGGC CACGGCGCTG
CTGGCGGGCG GCAGGCGAAC CGCGTTCGGG TACGACGCCG CCGGGCGGGA GGTCCAGCGC
CTGGTCGGCG ACTCGACCCG CCTCGGCCAG GTGTGGGACG CCAACCACCG GCTGCTGGCC
CAGGACCTCA CCGCGCGCGG CGCGCGCGTG CAGCGCAGGG ACTACCGGTA CCGCGCCGAC
GGCAACCTGC TCGCGGTCGA CGACCTCCTG GCGGGGCCGC GCCGGTACGA GCTGGACCCG
GCGGGGCGGG TGACCTCGGT GCTCGGCAGC GGCTGGAGCG AGGGCTACGC GTACGACCGG
GCGGGCGAGC TGACCTGGGC GACCGGGCCG GGCGAGACCT CGGGCGCGCG GTCGTACGCG
GGCACGCTGA TCCGGCGGGC GGGCGACGTC CACTTCGAGC ACGACGCGCA GGGCCGGGTG
GTCGTCCGGG CGCACCGCAC GCTGTCCGGG CGGGAGCGGA CCTGGCGGTA CGGCTGGGAC
GCCGAGGACC GGATGGTGTC CGCGACGACC CCGGACGGCG CCCGGTGGGC GTACCGCTAC
GACGGGCTCG GCAGGCGGGT GGCGAAGGAG CGGCTCGACG CGGGCGGCGC CGTCGTGGAA
CGGGTCGACT TCGTCTGGGA CGGCCTGGTC CTCGTCGAGC AGATCACCGC CGGGACCGCG
CTGACCTGGG ACTACGAGCC CGGTTCGCAC CGCCCCCTCA CCCAGGTCGA GCGGGTGCTG
GCCGCGCCGC AGGAGTGGGT CGACGCCCGG TTCCACGCGG TGGTGTCGGA CGTGGTGGGG
ATGCCCTCGG AGCTGCTCGA CGACGCGGGC GCGCTGGTGT GGCGCTCGCA GCGGACCCTG
TGGGGCGCCG TCCTGGCGGA GCTGGCTGGC GGCCCGGACT GCCCGCTGCG GTTCGCGGGC
CAGTACCACG ACCGGGAAAC GGGCCTGTTC TACAACGTCC ACCGCTACTA CGACCCGGAG
ACCGCGCGCT ACAGCTCCCC TGACCCGCTG GGCCTGCTGG CGGGCCCGAA CCCGCACGCC
TACGTCGTGA ACCCGCTCAG GCTGACCGAC CCGCTGGGGC TGAGCGGCTG CGAGCGGGCG
CGGAAGATCG CCGACCGGGT CGTCGAGCGG GCCCAGCAGG GGAGGGTGCG CGAGGCGTCC
AACTACCACG GCAGGCTGTC GCGGGAGCGG GAGCTGGAGA TCCTGTCCAA CCCGGACGGC
GTGTACCACT CCACCGGCAG CGGCGGACGG CTGATCTTCC GCCAGGGCGA CGACATCCTG
ATCACCGAGG GGCCGGGCAG CAGCGCGGGC CAGCTGGTCA CCAGCTACGG CCCGTCCGGC
CCGAGGGGCG AGAGCGGCGC GTCCATCTTC GGCGGCGCCC CGTCCGACCC AGGGTTGCCG
GTGACCCATG ACATGATCGT CGAGGGCAGG ATCCCGGTCC CCGGCGGTGG CACGCTCCCC
GCCGCGGTCC AGGTGCTGCC GCGTCCGTAG
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| Protein sequence | MDNPLVAAPR SDTTAVTGIG IAESSVDLAN GIADGNWVEA GLGGAGVGLE VLSMVIDPVG
TVASYGVGWL MEHVQPLKEA LDWLAGDPPV IRSFSETWGN VAAEVRAVAE ELGGQDAPGW
EGAAAQAFRG ANAETADAIA GAGVLAEGVG IGVMVMGEVV AAVRELVRDL VAELVGRLIS
WALEAVATLG LATPVIVAQA TTAISRMCSR IADLVRKLVR TISNVAPRIR SVVDKLGEIM
QKLGRLGRRA DTPSGPDTPN LAGGRPATPD APSGTTSPSG TTSPSGTTSP SGTTSPSGTP
APSSTTTPSG TSSPDPAPTG TSPGGTTTTS GAAPSPARPD SATPDSTSPS ARDQAGADPK
ASARPTSGRP TCGDPVDVVS GQVLLPQTDV ALGGALPLLL TRTHLSGHRA GARFGTSWAS
TLDQRLEVDE EGVCFVTEDG MVLLYPHPGA TPVLPVEGPR WPLSSTGDGG YEVVDAEAGL
TRRFTPSAGG PLPLGSITDL NGNRVTVDHD VDGVPTDVRH SGGYHVSVRS TGGLVTSLVL
AGPEDITLIR YGYDAERRLT EVVNSSGAAL RFSYDDDQRV VGWQDRNGMW YRYGYDDRGR
CVLNEGADDY LSGTFAYLDG RTVYTDALGN RTEFHLNRAH QVVREVDAGG GVVVSEWDRH
DRLLSRTDQL GRTTTHRYDE DGNLVALVRP DGRESTATYD AGRMPLVVED VDGAVWRREY
DPRGNLLAVT DPSGARTRFD RDERGNAVAI TGPLGEVRRI DYDLAGLPVA ITDAEGGRTG
YRRDRFGRVR EVTDPLGSTT TLGWTVEGRL ASRTLPDGSV ERWRYDGEGN PVEHVDAAGA
VSRTGYTGFD QPAWHVGPDG ARLEFGYDPN LRLTSVVNAR GQAWTYRYGP TGALVVETDF
DGRSTTYVHD ATGQLTAKVN GAGERIAYEH DELGRLRAKR TPHGDTTYDH DPAGRLIRAV
SRDADVLVER DLLGRIVAET VNGRTLRSEH DASGNRVRRV TPTGAVSEWE HDGTGRATAL
LAGGRRTAFG YDAAGREVQR LVGDSTRLGQ VWDANHRLLA QDLTARGARV QRRDYRYRAD
GNLLAVDDLL AGPRRYELDP AGRVTSVLGS GWSEGYAYDR AGELTWATGP GETSGARSYA
GTLIRRAGDV HFEHDAQGRV VVRAHRTLSG RERTWRYGWD AEDRMVSATT PDGARWAYRY
DGLGRRVAKE RLDAGGAVVE RVDFVWDGLV LVEQITAGTA LTWDYEPGSH RPLTQVERVL
AAPQEWVDAR FHAVVSDVVG MPSELLDDAG ALVWRSQRTL WGAVLAELAG GPDCPLRFAG
QYHDRETGLF YNVHRYYDPE TARYSSPDPL GLLAGPNPHA YVVNPLRLTD PLGLSGCERA
RKIADRVVER AQQGRVREAS NYHGRLSRER ELEILSNPDG VYHSTGSGGR LIFRQGDDIL
ITEGPGSSAG QLVTSYGPSG PRGESGASIF GGAPSDPGLP VTHDMIVEGR IPVPGGGTLP
AAVQVLPRP
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