| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0532 |
|---|
| Symbol | |
|---|
| ID | 8324691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 575005 |
|---|
| End bp | 576246 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644941076 |
|---|
| Product | ABC-type Na+ efflux pump permease component |
|---|
| Protein accession | YP_003098345 |
|---|
| Protein GI | 256374685 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1668] ABC-type Na+ efflux pump, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00136958 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAC CGTCCCCCGG CCGCGCGCTG TCCCCGGTGC GCGCGGTGTT CCTGGTGGCG
CGCCGGGAGT TCTTGAGCAA GGTGCGCACC CGGTCGTTCG TGATCGGCAC GGTGGTGATC
ATCGCGGCGA TGGCCGGGTT CGTGGCGCTG CAGGCGCTGC TGTTCACCTC GGCGTCGACG
TCGGTGGTCG GGCTGAACGG GCAGGCGACG GTGCTCGCGC AGCCGTTGGA GGAGACCGCG
CGCTCGCTCG GGCGCGAGGT CGAGGTCGTG GACGTGCCGG ACTCGGCGGC GGGCGAGGAG
CTGGTGCGGT CAGGGGACCT TGACGCGCTG GTGCTGGGCG CGCCGGACGC GCTGCGGGTG
CTGGTCAAGG ACGGGCTGGA CCCGTCGCTG GCGAACGCGG TCGACCTGAT CGTGAAGCAG
CAGGTGCTGG CGGCGCAGCT GGCCGAGGCC GGGCTGGACC CGGCGCGGGT GCAGCAGAAC
GTGGCGGACG CGCGGGTGCG GGTCGTGGCG CTGGACCCGG AGGACCCGAT GGTCGGGCAG
CGGCTGGTGA TCGGGCTGGT GATCGCCGGA CTGCTGTACT ACTCGCTGCT GGTCTACGGG
ACGATGGTCG CCCAGGGCGT GGTGGAGGAG AAGTCGAGCC GGGTCGTGGA GATCCTGCTG
TCGACGTTGC GGCCCGCGCA GCTGCTGATG GGCAAGGTGA TCGGGCTCGG CGCGGTCGGG
CTGGCGCAGC TGCTGCTGAT CGGCGCGATC GGGCTCGGGC TGGCGTCGGC CGCCGGGGTG
GTCGCGGTGG ACGGGCCGAC CGGCGGGGCG CTGCTGATCG GGGTGCTCTG GTACCTGCTG
GGGTTCTTCC TGTACGCCAC GGTGTTCGCG GCGGCGGCGT CGCTGGTGTC GCGGCAGGAG
GAGGTGCAGT CGGTGCTGAC GCCGATCACG ATGCTGATCG TGATCGCGTT CGTGGTGGGG
TTCAACCTGC TGGTCAGGGA CCCGGCGAGC AGGCTCGTGG CGGTGCTGTC GGTGCTGCCG
CCGTTCGCGC CGATCCTGAT GCCGGGGCGG ATGGCGATCG GGGCCGCGCC CGCGTGGCAG
GTGGTGCTGG CGGTGGCGCT GGCGCTGGGG GCCGCGGCGG GTGTGGTGTG GGTCGGCGGG
AAGGTGTACG CGAACGCGGT GCTGCGGACC GGGGCGCGGG TGCGGCTGCG GGACGCGCTG
CGGTCGCCGC GGGGCGCCGC GCAGGGGTCG GCGCGGGGGT AG
|
|---|
| Protein sequence | MSAPSPGRAL SPVRAVFLVA RREFLSKVRT RSFVIGTVVI IAAMAGFVAL QALLFTSAST
SVVGLNGQAT VLAQPLEETA RSLGREVEVV DVPDSAAGEE LVRSGDLDAL VLGAPDALRV
LVKDGLDPSL ANAVDLIVKQ QVLAAQLAEA GLDPARVQQN VADARVRVVA LDPEDPMVGQ
RLVIGLVIAG LLYYSLLVYG TMVAQGVVEE KSSRVVEILL STLRPAQLLM GKVIGLGAVG
LAQLLLIGAI GLGLASAAGV VAVDGPTGGA LLIGVLWYLL GFFLYATVFA AAASLVSRQE
EVQSVLTPIT MLIVIAFVVG FNLLVRDPAS RLVAVLSVLP PFAPILMPGR MAIGAAPAWQ
VVLAVALALG AAAGVVWVGG KVYANAVLRT GARVRLRDAL RSPRGAAQGS ARG
|
|---|
| |