Gene Amir_0419 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_0419 
Symbol 
ID8324578 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp454677 
End bp455330 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content74% 
IMG OID644940963 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003098232 
Protein GI256374572 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.00785696 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCGTC CAAAACCTAG CCGGTTGTGG ACGATCGAGT CAAGAACGGG TAGTTTCGGC 
GCCGTGCCGA GGCCCAGGAA GTTCGACGAG ACGCAGGTGC TGGAGCTGGC GCGGGAGCAG 
TTCTGGACCA CCGGGTTCGC GGGCACGCGC ATGGACGACA TCGCCCGCGT CACGGGCCTG 
GGCAAGGGCA GCCTCTACGG GGCGTTCGGC GACAAGGAGG CCCTGTTCCG CCGCGTCTTC 
GACGACTGGT GCGGGGCGAT CGTCGTCCTG GCCGAGGAGA ACCTGACCGG CCCGGACGAG 
GGCGCGCTCG CCCGGCTGGA GGCCTACGTC CGCTTCGTCG CCGCGAACAC CGCCGCCGAC 
GTCGGGCGCC GGGGCTGCTT CCAGGCCAAG GGGACCGCCG AGCTGGCCGC GTCCGACGAG 
TCCGTCGCCG ACCGCTCGGC CACCACCATG CGCGCGCTGC TCGGGCTGCT GAGCCGCGAG 
ATCACCGCCG CCCAGCGCTG CGGCGACCTC GCCCCCGACG CCGACCCGGA CGCGCTGGCG 
TCGCTGCTGC TGGTGGTGGT CCGGGGCGTC GAGGCGGTCG GGAAGGCGGG CCTGGGCGCG 
GAGGCCGTGA CCAGCGCGGC GGACACCGCG CTGGCGCTCC TGCCCAGGCC CTAG
 
Protein sequence
MDRPKPSRLW TIESRTGSFG AVPRPRKFDE TQVLELAREQ FWTTGFAGTR MDDIARVTGL 
GKGSLYGAFG DKEALFRRVF DDWCGAIVVL AEENLTGPDE GALARLEAYV RFVAANTAAD 
VGRRGCFQAK GTAELAASDE SVADRSATTM RALLGLLSRE ITAAQRCGDL APDADPDALA 
SLLLVVVRGV EAVGKAGLGA EAVTSAADTA LALLPRP