| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0210 |
|---|
| Symbol | |
|---|
| ID | 8324366 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 233255 |
|---|
| End bp | 234397 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644940755 |
|---|
| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_003098027 |
|---|
| Protein GI | 256374367 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.323945 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCGG CAGAACCCGT TCAGGCCGAG CGGGCCCCCG AGGGCGACGC CCTCATCTCG
ATCGAGGGCA TCCAGGTCCA CTTCCCGATC AAGCGGGGCG TCTTCCTGGA CCGCACCGTC
GGCCACGTGT ACGCGGTCGA CGGCGTGGAC CTGAGCATCC GCAAGGGCGA GACGTACGGC
CTGGTCGGCG AGTCCGGCTG CGGCAAGTCC ACGCTCGGCA GGGCCGTGCT GCGGCTCACC
GAGCCGACCG GCGGCCGGGT CGTGTTCGAC GGCACCGACC TGTCCACGCT CAAGGGCGAG
GCGCTGCGCA CCATGCGGCA GCGGATGCAG ATGGTCTTCC AGGACCCGAT GTCCTCGCTG
GACCCGCGCC AGTCGGTCGA GTCGATCCTG GTCGAGGGGC TGCGCGCGCA CGGGCTGGAC
AAGGGCAAGG AGGCCACCGG CAAGCGCCTG CGCGAGCTGC TGGCCGCCGT GGGCCTGCCG
TCGACCTCGC TGCGCAAGTA CCCGCACGAG TTCTCCGGCG GCCAGCGCCA GCGCATCGGC
ATCGCCCGCG CGCTGGCGGT CGAGCCCGAC CTGATCATCG CCGACGAGCC GGTGTCCGCG
CTCGACGTGT CGGTGCAGGC GCAGGTGGTG AACCTGCTGG AGGAGCTGCA GGAGAAGCTG
GGGCTGACCT ACCTGGTGAT CGCCCACGAC CTCGCGGTCG TGCGGCACAT CGCCGACCGG
GTCGGCGTCA TGTACCTGGG CGGGATCGTG GAGGAGGCGA GCTCGGACGG GCTGTACGCC
GAGCCGCTGC ACCCGTACAC CAGGGCGCTG CTGTCGGCGA TCCCGGTGCC GGACCCCGTG
GTGGAGGACC GGCGCGAGCG CATCCTGCTC AAGGGCGACC TGCCCTCGCC CGCCAACCCG
CCGACGGGCT GCCGCTTCCA CACGCGGTGC CCGTGGCGGC AGGCGACCAG GTGCGACACC
GAGCGGCCCG CGCTGCGCGA GGTGCTGCCC GGCCACCGGG TGGCCTGCCA CTGGGCGGAG
GACATCCGCT CCGGGGCGAT CAAGCCGCAC GAGGTCGAGG CGGTGCTGGT GGAGGAGGAC
GGGATCTCCC CGGACGTCCC GCTCGTCGGG CCCGCCTCGG TCACCGAGGT GCTGAACCCG
TAG
|
|---|
| Protein sequence | MTAAEPVQAE RAPEGDALIS IEGIQVHFPI KRGVFLDRTV GHVYAVDGVD LSIRKGETYG
LVGESGCGKS TLGRAVLRLT EPTGGRVVFD GTDLSTLKGE ALRTMRQRMQ MVFQDPMSSL
DPRQSVESIL VEGLRAHGLD KGKEATGKRL RELLAAVGLP STSLRKYPHE FSGGQRQRIG
IARALAVEPD LIIADEPVSA LDVSVQAQVV NLLEELQEKL GLTYLVIAHD LAVVRHIADR
VGVMYLGGIV EEASSDGLYA EPLHPYTRAL LSAIPVPDPV VEDRRERILL KGDLPSPANP
PTGCRFHTRC PWRQATRCDT ERPALREVLP GHRVACHWAE DIRSGAIKPH EVEAVLVEED
GISPDVPLVG PASVTEVLNP
|
|---|
| |