Gene Amir_0062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_0062 
Symbol 
ID8324208 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp71534 
End bp73003 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content78% 
IMG OID644940601 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003097882 
Protein GI256374222 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGCGATCG GAGCGCGACT CGGGCTGGAG GTGCCGGGCG GGATGGCCGA CGAAGCCGAT 
GTCGACCTGG AACTGCTCGC GAGGGTCCGC GCCGGGGACG ACGCCGCGTT CGGCGAGCTG
TACTCCCGGC ACGCGGACGC CGTCCGCAGG TTCGCCCTCC GCCACGTCCG CGAGCACGCC
GAGGCCGACG ACCTCGCCGC CGAGGCGTTC TTCCGGGTGC TCCAGGCCAT CCGCCGGGGC
AGCGGCCCCA CCGAGCACGT GCGCACCTAC CTGCTGACCA CCGCGCGCCG GGTCGCCTGG
GAGTGGAGCG GGCGCAGGCG CGACGTGCCG GTGGAGGACG AGGAGCTGAG CAGGCGGGTC
GAGCCGTTCC CCGACGCCAC CGCGGGCCGG GCCGAGCACA CCCTGATCTC GCGGGCGTTC
ACCAGCCTGC CGGAGCGGTG GCGCAGCGTG CTGTGGCAGG TCGAGGTGGA GGGCGTGCGG
CCGTCCGCCG TGGCGCCCGC GTTCGGGCTC AGCCCCAACG CGATGGCGGC GCTGGCCAGG
CGCGCCCGTG AGGGGTTGCG GGCCGCGTAC CTCCAGGCGC ACCTGGCCGA CGACCGGGGG
CCGCGCGCGT GCCACTCGGT GGTGGCCAAG CTGGGCGCGT ACACGGCGGG CGGGGTGCAG
GGCGCGGAGC AGGCGCGCAT CCGCAAGCAC CTGCGGACCT GCTCGTCCTG CAACGCGCTG
CACGCCGAGC TGGCCGAGGT CTGCTCGGCG CTGCGCGCCC ACGCTGGCCT GCTCGCCGCG
CCCGCGCTGC TGTCGCTGGC GTTCGCACCG GAGGTCGTAG CCCCGGTGGC GGGCAAGGTG
AAGCTGGCGC TGACCGCGGC CTCGGTGGCG GCGGTCGGGG TGTTCGGCGT GGCGGCGGGC
GCGCTCGACG GCGGTCCGGG GCCCGCGCTG GTGCAGCCGG GGCCGTACGC GCTGCGCACC
ACGGTGGACG ACCCGCTGAC GCCCCGCCCG AGCGTGACGC TGACCGGGAC GGCCACCAGC
CTCCCGCCTG CCGGCGACGG GGCCGCGCGC CCCGCGACCT CGAACCGGCC GTCGGGCGGC
GGGGGGCGGG GGTCGCTCAC CGGCGGTGAC CGGGTCGGGC CGCCGACCGG CGCGCCCCCG
CAGTCCGGGG GGCCGCAGTC CGGCGAGCCG CCGACCGGGG GGCCGCCCTT TGGCGAGCCC
GCGTCCGGCG AGCCGGGTTC CGGGCAGTCC GAGCCGCCTG CCACCACGAG CCCGACCCCC
GGCGCGCTGG AGGACCCCGG CACCACCGCG CTGAGCACGC CGGACGACCC GGAGCAGTCG
GGCAAGGAGG ACCCCGAGCC GCCCGGCACG ACCACCACCG GTCAGGGGCC CGACCCGGAG
CCCGGCCCGT CGGTGCTCCA GAGCCCTGAG CTGGGAATCA CGCCGACCAC GGTCACCCTG
CACCCCCGGA CGGCCTACCC GGTGGGCTGA
 
Protein sequence
MAIGARLGLE VPGGMADEAD VDLELLARVR AGDDAAFGEL YSRHADAVRR FALRHVREHA 
EADDLAAEAF FRVLQAIRRG SGPTEHVRTY LLTTARRVAW EWSGRRRDVP VEDEELSRRV
EPFPDATAGR AEHTLISRAF TSLPERWRSV LWQVEVEGVR PSAVAPAFGL SPNAMAALAR
RAREGLRAAY LQAHLADDRG PRACHSVVAK LGAYTAGGVQ GAEQARIRKH LRTCSSCNAL
HAELAEVCSA LRAHAGLLAA PALLSLAFAP EVVAPVAGKV KLALTAASVA AVGVFGVAAG
ALDGGPGPAL VQPGPYALRT TVDDPLTPRP SVTLTGTATS LPPAGDGAAR PATSNRPSGG
GGRGSLTGGD RVGPPTGAPP QSGGPQSGEP PTGGPPFGEP ASGEPGSGQS EPPATTSPTP
GALEDPGTTA LSTPDDPEQS GKEDPEPPGT TTTGQGPDPE PGPSVLQSPE LGITPTTVTL
HPRTAYPVG