| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0062 |
|---|
| Symbol | |
|---|
| ID | 8324208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 71534 |
|---|
| End bp | 73003 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | 644940601 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003097882 |
|---|
| Protein GI | 256374222 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCGATCG GAGCGCGACT CGGGCTGGAG GTGCCGGGCG GGATGGCCGA CGAAGCCGAT
GTCGACCTGG AACTGCTCGC GAGGGTCCGC GCCGGGGACG ACGCCGCGTT CGGCGAGCTG
TACTCCCGGC ACGCGGACGC CGTCCGCAGG TTCGCCCTCC GCCACGTCCG CGAGCACGCC
GAGGCCGACG ACCTCGCCGC CGAGGCGTTC TTCCGGGTGC TCCAGGCCAT CCGCCGGGGC
AGCGGCCCCA CCGAGCACGT GCGCACCTAC CTGCTGACCA CCGCGCGCCG GGTCGCCTGG
GAGTGGAGCG GGCGCAGGCG CGACGTGCCG GTGGAGGACG AGGAGCTGAG CAGGCGGGTC
GAGCCGTTCC CCGACGCCAC CGCGGGCCGG GCCGAGCACA CCCTGATCTC GCGGGCGTTC
ACCAGCCTGC CGGAGCGGTG GCGCAGCGTG CTGTGGCAGG TCGAGGTGGA GGGCGTGCGG
CCGTCCGCCG TGGCGCCCGC GTTCGGGCTC AGCCCCAACG CGATGGCGGC GCTGGCCAGG
CGCGCCCGTG AGGGGTTGCG GGCCGCGTAC CTCCAGGCGC ACCTGGCCGA CGACCGGGGG
CCGCGCGCGT GCCACTCGGT GGTGGCCAAG CTGGGCGCGT ACACGGCGGG CGGGGTGCAG
GGCGCGGAGC AGGCGCGCAT CCGCAAGCAC CTGCGGACCT GCTCGTCCTG CAACGCGCTG
CACGCCGAGC TGGCCGAGGT CTGCTCGGCG CTGCGCGCCC ACGCTGGCCT GCTCGCCGCG
CCCGCGCTGC TGTCGCTGGC GTTCGCACCG GAGGTCGTAG CCCCGGTGGC GGGCAAGGTG
AAGCTGGCGC TGACCGCGGC CTCGGTGGCG GCGGTCGGGG TGTTCGGCGT GGCGGCGGGC
GCGCTCGACG GCGGTCCGGG GCCCGCGCTG GTGCAGCCGG GGCCGTACGC GCTGCGCACC
ACGGTGGACG ACCCGCTGAC GCCCCGCCCG AGCGTGACGC TGACCGGGAC GGCCACCAGC
CTCCCGCCTG CCGGCGACGG GGCCGCGCGC CCCGCGACCT CGAACCGGCC GTCGGGCGGC
GGGGGGCGGG GGTCGCTCAC CGGCGGTGAC CGGGTCGGGC CGCCGACCGG CGCGCCCCCG
CAGTCCGGGG GGCCGCAGTC CGGCGAGCCG CCGACCGGGG GGCCGCCCTT TGGCGAGCCC
GCGTCCGGCG AGCCGGGTTC CGGGCAGTCC GAGCCGCCTG CCACCACGAG CCCGACCCCC
GGCGCGCTGG AGGACCCCGG CACCACCGCG CTGAGCACGC CGGACGACCC GGAGCAGTCG
GGCAAGGAGG ACCCCGAGCC GCCCGGCACG ACCACCACCG GTCAGGGGCC CGACCCGGAG
CCCGGCCCGT CGGTGCTCCA GAGCCCTGAG CTGGGAATCA CGCCGACCAC GGTCACCCTG
CACCCCCGGA CGGCCTACCC GGTGGGCTGA
|
|---|
| Protein sequence | MAIGARLGLE VPGGMADEAD VDLELLARVR AGDDAAFGEL YSRHADAVRR FALRHVREHA
EADDLAAEAF FRVLQAIRRG SGPTEHVRTY LLTTARRVAW EWSGRRRDVP VEDEELSRRV
EPFPDATAGR AEHTLISRAF TSLPERWRSV LWQVEVEGVR PSAVAPAFGL SPNAMAALAR
RAREGLRAAY LQAHLADDRG PRACHSVVAK LGAYTAGGVQ GAEQARIRKH LRTCSSCNAL
HAELAEVCSA LRAHAGLLAA PALLSLAFAP EVVAPVAGKV KLALTAASVA AVGVFGVAAG
ALDGGPGPAL VQPGPYALRT TVDDPLTPRP SVTLTGTATS LPPAGDGAAR PATSNRPSGG
GGRGSLTGGD RVGPPTGAPP QSGGPQSGEP PTGGPPFGEP ASGEPGSGQS EPPATTSPTP
GALEDPGTTA LSTPDDPEQS GKEDPEPPGT TTTGQGPDPE PGPSVLQSPE LGITPTTVTL
HPRTAYPVG
|
|---|
| |