| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0055 |
|---|
| Symbol | |
|---|
| ID | 8324200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 60861 |
|---|
| End bp | 64376 |
|---|
| Gene Length | 3516 bp |
|---|
| Protein Length | 1171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 644940593 |
|---|
| Product | glycosyl transferase family 2 |
|---|
| Protein accession | YP_003097875 |
|---|
| Protein GI | 256374215 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.180545 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGAGC AGCCCGTGTA CGCGGACGGG GCCGAGGACG AGGTGCTGTC CCGGCTCCGT
CGCGCTGCGG ACGTCTCGGC CGGGTCGGCC GAGCTGGCCC GCGCACTGCC GTCGTGGGAG
CTGATCTACC ACTTCTCGCC CCAGCGCACC GCGCTGCTCG CGCCGATCGA GCTGGTCGAG
GGCACCAGGG TGCTCGACTT CGGCTGCGGC TCCGGCGTGC TGACCAGGGC GATGGGCGAG
CTGGGCGCGG GCGTGGTGGG CGTCGAGGGG ACGCCGACGC GGGCCGAGGC GGCGCGGGAG
CGCTGCCGGG ACCTGCCGAA CGTGCGGATC GTCGACGGCG GCGCCGAGGA GATCGGCCTG
AACGGGCCGT TCGACCTGGC GCTGCTGTGC GGCGTCCTGG AGTACTCGTC GGTGTACGGC
GACGGTCCCG AGGCGCTGCT GGAGGACGTG GTCGGCGCGC TGGAGCCGGG CGGCGCGCTG
GTGCTGGCGA TCGAGAACAA GATCGGTCTC GGCTACCTGA CCGGCAGGCC CGAGGACCAC
CACGGCAAGT CGTGGGTCGG GCTGGCGGAC TACCCGCGCG GGGGCGCCCG GACGTGGCCG
CGCGCGGAGC TGGCCGAGCT GCTGGCGAAC GCGGGCCTGA CGGCCCAGCG GTGGATGCTG
CCGTACCCGG ACTACAAGCT GCCCCGCGTG ATCGTGGACG CCGACGTGCA CGGCCGGGGC
GACGCGGTCG ACCTGGTCGA CAAGCTGGTG CGCGACCCGC TGTACGGCGC GTTCGGCGGC
ACCACCGGCG CGGTGCCCGG CCGCTCGCTG CACCGCACCG CGGTCGTGGA GGGCTTCGGG
GCGTCGGTGT CGCCGTCGTT CCTGGTGGTG GCCGCGCGCA CGCCCGAGGC GGTGCGCCGG
TTCGTCCGGC CGGGTCTGGG CTGGCTGGTG AACTCGGCGC GGCTGCCGCG GTGGCGGCGC
TCGCGGGTGC TCACGACCGC GCTGGAGCTG CGCGCGGTCG AGGGCGCGGG CGCCGAGTCG
GACTGGTTGC GCCAGGAGGC GCCCGCCGTC GAGCCGCTGC TGCCGGGGAG GCCGCTGGAC
TCGCTGCTGC TGGAGGCGCT GGCGCGCGGC GACGAGGAGG AGCTGCGCGG GCTGCTCGGG
CTGTGGCGGT CCTGCTGCGA GGAGGGCGCG ACCGGGCTGG GCGACCAGCC GAGGCACCCG
TTCCTCCCTG GGGCGCCCGG CGTCCCGGTG CTGGCGGCGA ACGCGCTCGA CGTGCACCCC
GGCAACGTGG TGCTGCTCCC GGACGGCTCG CCGAGGCGGA TCGACCTGGA GTGGTGCGCG
GGCGAGGGCG TCGACGCCGA GCTGGTGCTG GTGCGGGCGC TGCTGGAGTT CGCCCGCGAG
GTGCACCGCA GCGGCGCGCC GCACCCGTGG GAGGCCGAGC TGACCACGGC CGAGCTGACG
CTGCGGCTGT GCGGGCTGGT CGGGCTGGCC GGTCGGGCGC GGGAGCGCTG GTCGGAGCTG
CTGGCCGCCG AGGCGCGGTT GCAGGAGCTG GTCAGCGGGA CGCCGTCGGA CGAGGTGCTG
ACCGCGCTGC TCGGCGACGT GGACCGGCCG GGCCCGGCGC GGGCCTGGGA GCTGCCGCCG
CTGACCCAGC TCGCCGCCGC GGCGGCGGAC CGGGAGCACC TGCGCGGGGT GGCCGACGAG
CTGCGCGGCG ACGTGGCCAG GGCCGAGGAC GCGCTGGACG CGACCAGGCG GCTGCGCGAG
GAGGCCATGG CGGCGCTCGC CGAGGTCGAG CGGCTCCGCG AGGAGGCGAC GGCCGAGGCC
GCGCACCTGC GGCGGGCGGT GGCGAAGGCG GACGAGCAGC TCGGCGACGC GCTGATGCTG
GTCGCGGACG CCGAGTCGGA GCGGGTCGGC GTGGAGCGGG AGCTGGCCGA GCGGTCCTCG
CGGGCCGAGG AGCTGGCGGG CGAGAACGCG CGGCTGCGGA CCGAGCTGGA CCGGCTGGCG
TCGTCGAGCG TCGTGCGGGC GGGCAACCGG TACCTGTGGC CCGCCGCGCG GCTGGTGCGG
GGCGCGCGGG ACCTGGCGCT GGGCCGGGGC GGCGAGGAGC CGGACCGGGT GCTGCGCGGG
GTCGGCAAGG TCGCGCCGTC GGCGGTGCCG CTGCTGGCCG GGCGGGTGCG CCGGGTGAGC
GAGCGGGACG CGGGGCTGCG CTACCAGCTG TCCGCGCCCT CCGAGGTGCC GGTCGGGCTG
GGCCAGGTCG TCGACCTGGA CGGCTGGGCG GTGCACGACG ACCTGCCGGT GCGCGCGGTG
TCGGTGGAGC TGGGCGGCCG GGTGCTCCCG GCGACCTCGG GCCACCCGAG GCCGGACGTG
GCGGCGGCGC TGGGCGTGCA CGGCTGGACG GGCTTCCGGG TCCGGCTGCC GGTGCGGGCC
GGCGCGGTGC GGCCGGTGCT GCTGGTGGAG CTGGCGGACG CGACGGTGCT GCGCCGCGAG
CTGCCCGAGC TGGTGGGCGT GCCGCACGAG CCGGAGCCGG TCGCGGTGGA CTGGCCGGGC
GAGGGCCCTC GGATCGCGGT GTGCCTGGCG ACGTACAACG CGCCGGGCGG GCACTTCCAC
GAGCAGGTCC AGTCGATCAA GGAGCAGACG CACTCGAACT GGGTGTGCCT GATCAGCGAC
GACGGGTCGA CCGACAAGGC CGCGCTGCGC AGCGCGACCG CCGGCGACCC CCGGTTCGTG
GTGGTCGAGC ACGCCGAGAA CGTGGGCTTC TACCGGAACT TCGGGCGCGC GCTGGCCATG
GTGCCGGTGG ACGCGGACCT GGTGGCGCTG TCCGACCAGG ACGACGTGTG GGACGCGGAC
AAGCTGGCCG TGATGGCGGA GCGGTTCGCC GACCCGTCCG TGCAGCTGGC GTACTGCGAC
ATGCGGCTGG TCGACGGCGG CGGCGCGGTG GTGGCCGAGA GCGCGTGGAC GAACCGGCCG
AACCAGTGGA CCGACCTGGA GCAGCTGCTG CTGCTGAACA CGGTCACCGG CGCGGCGACC
GTGCTGCGGG CCGACCTGCT GCGGGAGCGC GTGCTGCCGC TGCCGCCGGG CACCCCCGCC
GCGTACCACG ACCAGTGGAT CGCGGCGACG GCGCTGGCGG TGGGCCGGAT CGAGTTCGTG
GACCGGGCGC TCCAGTCGTA CCGGCAGCAC GGCGCGAACG TGACCGGCTG GCAGGTGCCG
AGGCTGGCCG ACGGGCTGCC CGGACTGCGC GGGCTGGCCG CGGCGGGCGC GGGCGTCGGG
CACGGCGTCG ACCTGCTGGA GGCCAGGCAG GCGGAGCTGG ACCACATCAC GGAGCACGAG
CTGCGGCGGA TCGCGCAGTT CTCGACCGTG CTGCTGATGC GCAACCAGGA CCTGCTGAGC
GAGCGGGAGA CCGCGAAGCT GGAGCGGCTG GCGGGCGCGG AGCGGCGGCT GTGGCCGCTG
GTGCGGCTGG CGCTGGAGGG CGAGGAGCGG CCGGAGACGG CGGGCGCCGA GCGGCGGCTG
CTGGCGGCGG CCCTGCTGCG CAGGCACCAG CAGTAG
|
|---|
| Protein sequence | MVEQPVYADG AEDEVLSRLR RAADVSAGSA ELARALPSWE LIYHFSPQRT ALLAPIELVE
GTRVLDFGCG SGVLTRAMGE LGAGVVGVEG TPTRAEAARE RCRDLPNVRI VDGGAEEIGL
NGPFDLALLC GVLEYSSVYG DGPEALLEDV VGALEPGGAL VLAIENKIGL GYLTGRPEDH
HGKSWVGLAD YPRGGARTWP RAELAELLAN AGLTAQRWML PYPDYKLPRV IVDADVHGRG
DAVDLVDKLV RDPLYGAFGG TTGAVPGRSL HRTAVVEGFG ASVSPSFLVV AARTPEAVRR
FVRPGLGWLV NSARLPRWRR SRVLTTALEL RAVEGAGAES DWLRQEAPAV EPLLPGRPLD
SLLLEALARG DEEELRGLLG LWRSCCEEGA TGLGDQPRHP FLPGAPGVPV LAANALDVHP
GNVVLLPDGS PRRIDLEWCA GEGVDAELVL VRALLEFARE VHRSGAPHPW EAELTTAELT
LRLCGLVGLA GRARERWSEL LAAEARLQEL VSGTPSDEVL TALLGDVDRP GPARAWELPP
LTQLAAAAAD REHLRGVADE LRGDVARAED ALDATRRLRE EAMAALAEVE RLREEATAEA
AHLRRAVAKA DEQLGDALML VADAESERVG VERELAERSS RAEELAGENA RLRTELDRLA
SSSVVRAGNR YLWPAARLVR GARDLALGRG GEEPDRVLRG VGKVAPSAVP LLAGRVRRVS
ERDAGLRYQL SAPSEVPVGL GQVVDLDGWA VHDDLPVRAV SVELGGRVLP ATSGHPRPDV
AAALGVHGWT GFRVRLPVRA GAVRPVLLVE LADATVLRRE LPELVGVPHE PEPVAVDWPG
EGPRIAVCLA TYNAPGGHFH EQVQSIKEQT HSNWVCLISD DGSTDKAALR SATAGDPRFV
VVEHAENVGF YRNFGRALAM VPVDADLVAL SDQDDVWDAD KLAVMAERFA DPSVQLAYCD
MRLVDGGGAV VAESAWTNRP NQWTDLEQLL LLNTVTGAAT VLRADLLRER VLPLPPGTPA
AYHDQWIAAT ALAVGRIEFV DRALQSYRQH GANVTGWQVP RLADGLPGLR GLAAAGAGVG
HGVDLLEARQ AELDHITEHE LRRIAQFSTV LLMRNQDLLS ERETAKLERL AGAERRLWPL
VRLALEGEER PETAGAERRL LAAALLRRHQ Q
|
|---|
| |