| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4287 |
|---|
| Symbol | |
|---|
| ID | 8255423 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 5166009 |
|---|
| End bp | 5167361 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644937953 |
|---|
| Product | peptidase S13 D-Ala-D-Ala carboxypeptidase C |
|---|
| Protein accession | YP_003094540 |
|---|
| Protein GI | 255534168 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
|---|
| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGAT TTATCCACAA AAGAAAGCAA CTTCAGGTGC AGCGCCTCGG GTTAGCTTTG
TTGGCAGCTA TATTATGCCC GGTTTTATTT TCCGCCTGTT CTACAGAGAA GCAGATTGGC
CGTTCTGTAA AAAAGGTTTT TGCAGACTCG CCGGTACTGA AAAAATATTA TGCAGGCTTT
GCATTATACG ATATGGCCAC AGCACGAATG TTGTTTGAAA GACATGCCGA CCAGTATTTT
ACGCCGGCAT CCAATACCAA GCTGTTTACC TTTTATGCAG GTTTAAAAAT GCTGCCCGAC
TCCATTCCTT CGCTGCGTTA TGTAGAGCGG GGCGATTCCC TGATCTTTTG GGGTACAGGG
GACCCGTCTT TGTTGCAAAG CAAGCTGAAG GGAACAAAGG CCATGGAATT TTTAAAGGCC
AGTCCGAAAA AACTGTTTTA TGCACCAGGA AGGTATACCG GCGATTTTTA CGGCAGTGGC
TGGCAATGGG ATGATTATAA CGAGTATTAC CAGGCCGAGA TCAATGAACT GCCGTTGATG
GACAACCTGC TTAGCCTGAA GGCCGAAAAC GGAAGGCTGT CTATGGTTCC CCGCCTGCTG
AAGGACTGCC TTTCGGCAGA TTCCGGAGAC ACCCAAAAAA CATTCAGCGT TACGCGCGAT
TTTTATACCA ATCATTTTAA ATACCCTGCA ATACCTCTTC CTGCCGGCTA TAGCCAGGAG
GTTCCTTATA AGGTAAGCCT GCCGCTTACG CTGAGCCTGC TTTCAGATAC GCTGAAAAAG
ACAGTTATGC TGGCTAAAAT GAAAATGCCT GCCGATGCAA AGACCGTTTA TAATATGAGA
ACCGATTCTG TGCTCAAGGC AATGATGCTG CCCAGCGATA ATTTTATTGC AGAGCAGCTG
CTGCTGGTTT ACGCAAACCA ACTGGGGGAA GAGCTAAATA CCAGTAAGGC CATTTCTTAT
ATTGAAAAAA CGTATTTAAG CGAGCTGCCG GATAAACCAC GCTGGCAGGA TGGCTCTGGT
CTTTCCAGGC GCAATTTATT TACCCCCCGG GATATGATAA AATTGCTGGA GCTCATCTAT
AAACAGGTAA ACAACCCGGC ACGCCTGTTT AACATGATGC CTGCGGGGGG CAAAAGCGGA
ACACTCAGAA ATGCCTATCC CAAAACCGAC CAGCCTTTTG TATTTGGTAA AACAGGTACC
CTTTCAGGGG TGCATAACCA AAGCGGCTAT GTGCTTACCA AAAAGGGAAA AACTTATATT
TTCTCTTTTA TGAACAACAA TTATGTTGTT CCAACGGCCG ATGTGAGAAA TGAAATGGTG
CGTGTTATGA CTTATATCCA TGAAAAATTC TGA
|
|---|
| Protein sequence | MIRFIHKRKQ LQVQRLGLAL LAAILCPVLF SACSTEKQIG RSVKKVFADS PVLKKYYAGF
ALYDMATARM LFERHADQYF TPASNTKLFT FYAGLKMLPD SIPSLRYVER GDSLIFWGTG
DPSLLQSKLK GTKAMEFLKA SPKKLFYAPG RYTGDFYGSG WQWDDYNEYY QAEINELPLM
DNLLSLKAEN GRLSMVPRLL KDCLSADSGD TQKTFSVTRD FYTNHFKYPA IPLPAGYSQE
VPYKVSLPLT LSLLSDTLKK TVMLAKMKMP ADAKTVYNMR TDSVLKAMML PSDNFIAEQL
LLVYANQLGE ELNTSKAISY IEKTYLSELP DKPRWQDGSG LSRRNLFTPR DMIKLLELIY
KQVNNPARLF NMMPAGGKSG TLRNAYPKTD QPFVFGKTGT LSGVHNQSGY VLTKKGKTYI
FSFMNNNYVV PTADVRNEMV RVMTYIHEKF
|
|---|
| |