| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4262 |
|---|
| Symbol | |
|---|
| ID | 8255398 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 5139046 |
|---|
| End bp | 5140593 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644937928 |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_003094515 |
|---|
| Protein GI | 255534143 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAGA AAGGTTTAAA AAAGTGGATC ATCACCTTTA CAGTGATCAC AGCTTCTCTT
TTGGAGCTGA TTGATACCAC CATTGTAAAC GTGGCGATCC CTCAGATACA GGGCAACCTG
GGCGCAACAC TCGAAGATGT GGCCTGGTTG TCTACCGGTT ATGCAGTTGC CAATGTAATT
GTATTGCCGA TGTCCGGCTG GCTTGGCAGC CGTTTCGGAC GAAAAAACTA TTTCCTGTTT
TCCATCGTCC TGTTCACCGT AGCCTCTTTT CTCTGTGGTA ATGCAACTAA CCTGGAAGAG
CTGATCGCTT TCCGCATTTT GCAGGGTCTT GCAGGTGGGG GTTTAATTTC AACTGCCCAG
GCCATCTTAA TTGAAACCTG GCCCCGCGAG GATGTGGGTA TCGCAACTGC TTTATTTGGT
TTGGGTGCGG TAGTAGGCCC CACTGTTGGC CCCACAATTG GTGGTTACCT GCTCGAGATC
AGCACCTGGC CGCTTATATT TTATGTAAAC ATTCCCGTCG GCATCCTCGC CGCGTACTGT
ACGTATATGT TTGTACGGGA AACGCCGAAG GATGGCAAAG GTATGCCGGT CGACTGGTGG
GGAATTGTAT TATTGGCCGT TGCGGTAGGT AGCTTACAGA CCGTATTGGA AAAAGGGGAA
AGTGAGGACT GGTTTGCTAC GCCTTACATC ACGGCGCTCG CCGTAACTTC GGTACTTGGC
CTGCTCCTGT TCATCTGGAG AGAGCTGAGT ACAGACCACC CTATTGTAAA CTTCAAGATC
ATGCGCCACC GCAGTTTTTC TGTGGGGATG TTCACCTCAT TTATTTTAGG CTTTGGTTTA
TACGGATCCG TATTCGTGTT CCCTGTATTC TGCCAGAATT TACTGGGCTT CTCTCCGCTT
CAGACAGGAG AACTGCTCTT TCCCGGGGGG CTCTGTACCA TCGTGATGAT GCCTTTTATC
GGAATTATGC TCAAGAAAAA CATTCCTGCC CAGTTTATGG CAACCATAGG GATGTTCCTC
TTTTTTGTAT TCTGCTCTAT GCTCAGCAAG TCCACCCTGC AATCGGGCAC CAATGATTTC
TTCCTGCCCC TGATGATCAG AGGTGTGGGT ATGGCCCTGT TATTTGTACC GCTTACCACC
TTGGCCATTC AGGACCTTAA AGGGGCTGAA ATTGGCCAGG GTTCAGGCCT CAATAACATG
ATGAGACAGT TGGGTGGTTC ATTTGGTATT GCCGCTTTAA CTACCCTCAT CCATGTGCGT
CAGGGTTTTC ACCGCAGCAA TCTGCTGGTC AACATCAACG AATACAATCC GGCTTTTACC
GACCGCTTTA ACGGCTTTAT CCAAAATTTT ATGGCCAAAG GCTATACTTA TCTGGATGCA
AAGGCCCTGG CCACAAAAGC TATAGAAGGC ACTGTAACCA AACAGGCATT GCTGCTCACT
TACAGTGATG CGTACTGGGT GGCCGGGCTG ATCCTTTTGT GTTCTATCCC GCTCCTGTAT
CTTCAGAAAT TTAAAAAGAA CGTTGCCGTT CCGGCAGATC TGCATTAA
|
|---|
| Protein sequence | MAEKGLKKWI ITFTVITASL LELIDTTIVN VAIPQIQGNL GATLEDVAWL STGYAVANVI
VLPMSGWLGS RFGRKNYFLF SIVLFTVASF LCGNATNLEE LIAFRILQGL AGGGLISTAQ
AILIETWPRE DVGIATALFG LGAVVGPTVG PTIGGYLLEI STWPLIFYVN IPVGILAAYC
TYMFVRETPK DGKGMPVDWW GIVLLAVAVG SLQTVLEKGE SEDWFATPYI TALAVTSVLG
LLLFIWRELS TDHPIVNFKI MRHRSFSVGM FTSFILGFGL YGSVFVFPVF CQNLLGFSPL
QTGELLFPGG LCTIVMMPFI GIMLKKNIPA QFMATIGMFL FFVFCSMLSK STLQSGTNDF
FLPLMIRGVG MALLFVPLTT LAIQDLKGAE IGQGSGLNNM MRQLGGSFGI AALTTLIHVR
QGFHRSNLLV NINEYNPAFT DRFNGFIQNF MAKGYTYLDA KALATKAIEG TVTKQALLLT
YSDAYWVAGL ILLCSIPLLY LQKFKKNVAV PADLH
|
|---|
| |