| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4261 |
|---|
| Symbol | |
|---|
| ID | 8255397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 5137999 |
|---|
| End bp | 5139042 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644937927 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_003094514 |
|---|
| Protein GI | 255534142 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACTG AAAAGAAAAA AAAGAATAAA GTTATCCCTA TCATATTGGG CGTACTGATC
ATTTTAGGCG CCATATTTGG TACCAAAGAA TACCTCTATT ACAGCAAACA TGTAGATACG
GACGATGCCC AGATCGATGG CGACATCAGC CCGGTAGTTT CCCGCGTTGG GGGTTATGTT
CAGGAAATAA ACTTCGAAGA AAACACCCAT GTTACCGAAG GACAGGTACT GGTTAAACTG
GACGACCGTG ACTATAAGCT AAAACTGGAA CAAGCCCTGG CCGGACAAAA AGGGGCCAGT
GCAGGTGTTG GTGTTTCTGA ATCGCAGATT GCTGCCACAG CAGCAAATAC CAGTACGGCC
AAAGCCAATA TTGAGGCCGC CAAAGTTAAG CTGAACCTTG CCCAGAAAGA TTATGAGCGC
TATGCCAACC TGGTAAAAGA CGGTTCTGTA ACCCAGCAGC AATTTGATCA GGCCAAAGCA
CAAAAAGAAT CTGCGCAGGC TGCTTTTACC GCTGCAAACG ATCAGTACAA TGCGGCAGTA
AAACAGGTAG GCACCAGCCA GTCGCAGCTT GCAGTAAGCA GCAATACCGT CACCCAGCAC
CAGGCCGATG TCGATTTTGC ACGCCTGCAG CTGTCGTACA CCGAGATCAA AGCTCCGGCA
ACGGGCATCG TTTCTAAAAA GAATGTACAG AAAGGGCAGT TGGTACAAGC CGGACAGGCT
TTGTTTTCCA TTGTAAACGA CAACAGCATC TACATTACCG CAAACTTTAA AGAAACCCAG
CTGGAAGATA TCAAAACAGG CTCAAAAGTT AAAATAGATG TGGATGCCTA TCCCAGCGAC
GAGGTATTGG GCGAAGTGTA CAATTTTGCG CCCATCACCG GCGCAAAGGG TTCATTGCTC
CCACCCGATA ATGCTACCGG AAACTTTGTA AAGGTAGTGC AGCGTGTACC TGTGAAAATA
AAAATAACCA AAGCCCCCAA AGAGATCCTT GCCAAACTGC GCCCCGGAAT GAGCGTTAAG
GTTTCTGTCT CTATAAAAGA TTAA
|
|---|
| Protein sequence | MTTEKKKKNK VIPIILGVLI ILGAIFGTKE YLYYSKHVDT DDAQIDGDIS PVVSRVGGYV
QEINFEENTH VTEGQVLVKL DDRDYKLKLE QALAGQKGAS AGVGVSESQI AATAANTSTA
KANIEAAKVK LNLAQKDYER YANLVKDGSV TQQQFDQAKA QKESAQAAFT AANDQYNAAV
KQVGTSQSQL AVSSNTVTQH QADVDFARLQ LSYTEIKAPA TGIVSKKNVQ KGQLVQAGQA
LFSIVNDNSI YITANFKETQ LEDIKTGSKV KIDVDAYPSD EVLGEVYNFA PITGAKGSLL
PPDNATGNFV KVVQRVPVKI KITKAPKEIL AKLRPGMSVK VSVSIKD
|
|---|
| |