Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_4260 |
Symbol | |
ID | 8255396 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 5136662 |
End bp | 5137978 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644937926 |
Product | outer membrane efflux protein |
Protein accession | YP_003094513 |
Protein GI | 255534141 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATACATA AATCAATCAG ATTAAGCTTC TTAACATTTA TTATCCCGGG AATCCTCTAC GCCCAGGACA TAAAAAAATT AAGCTTGCAG GAGGCTATCG CCCTTGGGAT AGAGAACAGC AAAAATCTAA AACTATCGCA AAATAAAGTA GAGCAGGCCA TTGCGCAGTT AAACATGGTT AAAGACAATG CTTTACCAAG CGCAAAGGCA TCGTTTTTGT ACAACCATGC CGAAATCCCC ACCAACACCT TAAGCATTGG CGGCGGCAAC CCGATCCATC TGCCCAAGCG CGCAGATGCC TTTATCGGTA CTGCTGCTGT TGAAGAGCTG GTTTATGGCG GCGGAAAATT GAAATATGCC GAAGAATCTA CCCGGCTGCT TTCCGATGTG GCGCGCCTGG ATGCGGATAA AAACAAAGAA GAGATCAGCT ACGCTGTCAT CAACACCTAT TATTCCTTGT TTAAAGTGAT GCAAAGCAAA AAAGTTATCG CACAAAACCT GGAGTCTATC GACAGTCAGC TTAAACAGGC GCAGCGCTTT TTTGAACAGG GAATTGTAAC CAAAAATGAT GTATTGAGGT TCCAGCTGCA ACAGGCAAAT ATCTCGCTAA CCGATATGGA GGCAGAAAAC AACCGCAAGA TCATTAACTA CAACCTGGAT ATTTTACTCG GATTAAACGA AAATACGCAG ATCGAAATTG CCGATCCGGA TGCCGCAGCA AAAGCCATCG GACCTTTAAG CAGTTACATC GACCTCGCCC TGGGCAGCAG ACAGGAACTC AGACAGCTGG ACCTTCAAAA CAAGGTGGCC GATGTCAATA TCAAGTCGGT AAAAGCCAAT ACCCTTCCTA CTGTTGGGGT AGGCGCTAAC CTCTATTACA TTAACCCGAG TGGCAAATTT GTACCGCCAA CAGACCAGTA CATTATGCCG GTAACCCTGG GGGCCAACAT CTCCTGGAAT ATTGGTAACC TGTGGACCAA CAAACACAAG GTAACCGATG CCAGAATTCA GCAAAAAGAG GTAGAGCTAC AAAAAGACAT CCTTTCTGAC CAGGTTAAAA CGGAGATCAA CAGCAATTAC CAGCGCTACC AGCTGGCCCT AAATAAGATC AGGGTACTGG AAACATCCAT TGCCCAGGCT ACAGAAAACG ACAAATTGCT GGCCTCAAAA TATAAAAACA ATGTCGCTTC GGCAATAGAC AGGATTGATG CCGAAACCCT GCTTTATCAG GCTAAAATTA ACCTCGAACT GGCTAAAGCC GATGCAGGTC TGGCTTATTA TACTTTACTA AAATCTACCG GAAAAATTTC TCAATAA
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Protein sequence | MIHKSIRLSF LTFIIPGILY AQDIKKLSLQ EAIALGIENS KNLKLSQNKV EQAIAQLNMV KDNALPSAKA SFLYNHAEIP TNTLSIGGGN PIHLPKRADA FIGTAAVEEL VYGGGKLKYA EESTRLLSDV ARLDADKNKE EISYAVINTY YSLFKVMQSK KVIAQNLESI DSQLKQAQRF FEQGIVTKND VLRFQLQQAN ISLTDMEAEN NRKIINYNLD ILLGLNENTQ IEIADPDAAA KAIGPLSSYI DLALGSRQEL RQLDLQNKVA DVNIKSVKAN TLPTVGVGAN LYYINPSGKF VPPTDQYIMP VTLGANISWN IGNLWTNKHK VTDARIQQKE VELQKDILSD QVKTEINSNY QRYQLALNKI RVLETSIAQA TENDKLLASK YKNNVASAID RIDAETLLYQ AKINLELAKA DAGLAYYTLL KSTGKISQ
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