| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4232 |
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| Symbol | |
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| ID | 8255368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 5108931 |
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| End bp | 5109473 |
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| Gene Length | 543 bp |
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| Protein Length | 180 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644937898 |
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| Product | RNA polymerase sigma factor, sigma-70 family |
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| Protein accession | YP_003094485 |
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| Protein GI | 255534113 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000395934 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGGAACCGG TATACATCGA TAAAAATGCG GCACTGATCA ACGGCTGCAG GCGGGGCGAC
CGTAAGGCAC AATTTGAAAT TTACAAATTG TATGCTAAAG CTATGTATAA TGTGGCCCTA
CGGATCGTAA ATTTTGAAGA AGAGGCAGAA GATGTTTTAC AGGATTCTTT TTTAGATGCG
TTTACAAGGA TAGACAATTT TAAAGGAGAG GCTACTTTTG GCTTGTGGCT GAAGCAGATC
GTGATCAATA AATCGATCAA CCAGCTGCGG AAGCGTAAGG TGGAGTTCGT AAATATAGAG
GAGGTGGATG TAGCGGAAGA AAATGAACCG GCCGAAGACC TGCAATGGAA GGTAGAGGAA
ATCAGGACAG CGGTAGCAAT GCTTCCTGAC AGGTATCGGG TGGTGTTGAC GCTGTATCTG
TTTGAGGGCT ATGACCATGA AGAGATCGCT TATATTTTAA AAATTACCGA AGGGACTTCA
CGCACCCAGT ATATGCGGGC AAAGATGAAA TTAAATGACT TATTAGCAAA GAGAGGAGCA
TAA
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| Protein sequence | MEPVYIDKNA ALINGCRRGD RKAQFEIYKL YAKAMYNVAL RIVNFEEEAE DVLQDSFLDA
FTRIDNFKGE ATFGLWLKQI VINKSINQLR KRKVEFVNIE EVDVAEENEP AEDLQWKVEE
IRTAVAMLPD RYRVVLTLYL FEGYDHEEIA YILKITEGTS RTQYMRAKMK LNDLLAKRGA
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