| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4180 |
|---|
| Symbol | |
|---|
| ID | 8255315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 5057365 |
|---|
| End bp | 5060586 |
|---|
| Gene Length | 3222 bp |
|---|
| Protein Length | 1073 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644937845 |
|---|
| Product | Exodeoxyribonuclease V |
|---|
| Protein accession | YP_003094433 |
|---|
| Protein GI | 255534061 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0648836 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCAAC AGCCATTAAA AATATTACAA GCATCTGCGG GATCGGGTAA AACGTTCAGT
TTAACAGCCC ATTACTTAAC CCTGCTTTTA TCAGGTGAAA ACAAATACCG TGAAATTCTG
GCGGTAACTT TTACCAATAA GGCTACCGAA GAGATGAAAA GCCGGATACT GGATGTATTG
CAGGGCTTTG CTACCGGGGA TGAAAAATTT AACAGTTACC GCAATATTGT CCTGAATGCA
AATCCGACAT TAAACGCAGA TCAGTTAAAA GAAAAAGCAG ATCAGATTTA CCGTAAAATC
CTGCACGATT ACAGTCGCTT TTCAGTAAGT ACCATTGATG GTTTTGTGCA GAAAGTGATC
CGTGGTTTTG CGTTTGAGCT GGGACTGGAT GCCGGTTACA GTCTGGAAAT GAACTATGAT
AAAGTGAAAG ATGACCTGGT AGCTAAGCTG GACGAAGCCC TGGATCATAA CAGGCAACTG
TTACAGTGGA TCATTGACCT TGCTATTGAG CGGATTAATG ACAACAAAAG CTGGAACTAT
AAAACAGAGC TCTACAACCT GATCGGGGAA ATATTCAAGG AACGTTTCCA GGTTTTTGAA
GAGGCTATTG AAGCATTTGG CGACGATGGC ATTGACGAGC TGTTTAAGCA GTATATCAGC
ATCACCAAAG CCGCCACCAA AAGTTTTGAA GAAGAGCTTA CCAATCTGGC CATACAGGCG
CAGGAGGTAT TTAACCGGTT TGGCGTAGAA AAAGAGCATC TCAATAAGAA ATCGGTCAGT
CCGCTGGCTA AGATCCCTTT GGTCATTAAC GGTGATTTTT CCAAAATAGA ATCCCTGTTC
AACTATATAG ATGAACCGGA GATCTGGTTT CAAAAAAACA CCAGTCTGGA CGAAGTTTAC
CAGTTGCTGA ACCCTATATT AAAAAACATA AAGGATTATT ATTTAACCCA TTTGCCCAAT
TATACCCTGG CCATTGCTTT TAGTAAAAAT CTATATTATC TGAGGCTGAT GCAGGAAGTA
GCGTCCCTTT TAAAAGTTTA CCGGCAGGAG AATGACAATT TGCTGATCAG TGATGCACAA
AAGCTGATTA CAGGAATTAC AGATGATGCA GGAGATAACC CCTCTTTTAT CTGGGAAAAG
GTAGGTACCC GGTACCGGAA TTTTTTATTC GATGAATTTC AGGATACTTC AACAAGTCAG
TGGAACAGTT TCCGCTCATT ACTCGCCAAT GCTATTGCTA CGCCAACTGA AGAATTTATT
GACCATTTAA TTGTTGGGGA TACCAAGCAG TCAATTTACA GATGGCGTAA TGGCGACTGG
AACATTTTGC ACCGGCAGGC GAAGTTTGAC ATTGGTGCCG GTCGCGTGCT GGAAGAAAGT
CTGGAAGAGA ATTACCGGAG TGCCGAGCAT ATCATTACTT TCAACAATTA CATTTATAAA
AAGATCCCGG ATTTGCTTCA GGAGGAGTTG AACCAGGGTT TGGATGGAAA GCCGGAAGAG
CTGAAGAACT GGTGGCAGGA GCAGCATTTT GATCGGGTCA TTACTGATAT ATACAGTACC
TCTACGCAGC AGTTTGCCCC TAACACCGCT ATCGGCGGAA CAATAAAACT CAGAAAAATC
GGAAAAGAGG ATGCCCCTGA AGAACTGCGT TTTACCGAAA CCATATTCAG GGATATCTCG
CTTAACGAAA TCATTGTAGA AATTGGCGGG TTAAAGTCGG AACAGGGGTA TGTGGCAAGA
GATATCGCCA TACTTGTCCG GTCAAATACT GAAGCCGTTA CTACGGTTAA AAAACTGATG
GATCAGGGTA TTGATGTTAT TTCAGGAGAA GCCTTACTGA TTGCCAACAA CCTGGCAGTT
CAGCTCATTG TTGATACAAT GAAAGCATTA ATTGGCCTGG ATGCAGAAAC AGCCTTGTAT
AAGGCCAATT GTATCGCCTT GTACAATTCA TTAAGGAATG TAAGTGCCGA TGCCAATCAT
TATCTTAACC TTAACCATAC CTCATTTAGT AGCTTAAGCG CAGTATTGCC GGCGTCTTTA
TGTGCAAGCT GGCAAAGCTG GATGCAGCTG CCATTGCCAG AACTTGTTGA AATTCTGATG
GAGAGCTATG GACTGAGCCG TATGGAAGCA CATCTTCCCT ATCTGCTGGC TTTCCGTGAC
CTCGCGGGTA ATGCCACAAG GCTTGGAGAA AAGGGAATTG TCGCCTTTTT AAACTGGTGG
GATGAAGAAG GGATAAAAAA ATCCCTGCCC TCTCCGGAAA GTGCAGATGC CATACAAGTG
ATTACCATAC ATAAATCTAA GGGGCTTGCT TTCAGAGCCG TTTTTATTCC TTTTTGTAAC
TGGGAAATTA AAGGAAAGGC GAATTCCATA TTTTGGGTTT CAGCAGAAGA AACGGCATTT
AAAGCCTTGC GGGGCATACC TTTAAAATAC AATGAATCAC TTGGTAACTC AGCGGTGGCA
AAAGCCTATT ATGAAGAGCT GTTGTATAAC CATATGGATG CTTTAAACAT GCTTTATGTA
GCTACTACGC GGGCACGTGA TTATTTGTAT ATCGCCACCA TGGCTAAAAA GGACCCGGCC
AGGCTCGGCA CGATAGGTGA TGTACTGAAC AAGACTTTTG AAAATGATTT TGATGAAAAC
AACACTTATG AAATTATTGA CGAAGTGCCG GCAAAAGAAG CACCGAAGAA AAAGGTAAAA
GAAATAGAAC TTGACCATTA TCCAACCACC AGCCGGCTGG CAGAACTGTA TGTTGCGGAG
CAGGAACAGC ATGCAAAACA TATGCTGAAT ATTCAGAAAT CAGGCAGGAG AGGCTCATTG
CTGCACGATG TGCTGGCAAA TGTGGCGAAT ACAGAAGAAG TAGATAACTA CCTTGAAGGC
CTGGCGCTGG AAGGCCTGAT CCTGGAGAAA GAAAAAGCCG AACTCCGCAA TTCGGTGCTG
GAGGTTTTGA ATCATGCCGA CCTGCAGGCC ATATTGAATA AAGCAACCCA AAGCATTACA
GAAAAGAGCA TCATAGATGC AGAAGGGAAA ATGCACCGTC CTGATCGTGT GTTGATCAGT
GCTGATGAAG TGATTATTCT GGACTATAAG TTTACCCTGC AGGAGTCGAA AGAACACATC
ACGCAGGTAT TGAATTATAA AACCCTGTTT ACCGGAATGG GATACAGCAA GGTAAGTGGT
TATTTGTTTT ATGCCGTAAC CAAACAACTT AAATCTATTT AG
|
|---|
| Protein sequence | MPQQPLKILQ ASAGSGKTFS LTAHYLTLLL SGENKYREIL AVTFTNKATE EMKSRILDVL
QGFATGDEKF NSYRNIVLNA NPTLNADQLK EKADQIYRKI LHDYSRFSVS TIDGFVQKVI
RGFAFELGLD AGYSLEMNYD KVKDDLVAKL DEALDHNRQL LQWIIDLAIE RINDNKSWNY
KTELYNLIGE IFKERFQVFE EAIEAFGDDG IDELFKQYIS ITKAATKSFE EELTNLAIQA
QEVFNRFGVE KEHLNKKSVS PLAKIPLVIN GDFSKIESLF NYIDEPEIWF QKNTSLDEVY
QLLNPILKNI KDYYLTHLPN YTLAIAFSKN LYYLRLMQEV ASLLKVYRQE NDNLLISDAQ
KLITGITDDA GDNPSFIWEK VGTRYRNFLF DEFQDTSTSQ WNSFRSLLAN AIATPTEEFI
DHLIVGDTKQ SIYRWRNGDW NILHRQAKFD IGAGRVLEES LEENYRSAEH IITFNNYIYK
KIPDLLQEEL NQGLDGKPEE LKNWWQEQHF DRVITDIYST STQQFAPNTA IGGTIKLRKI
GKEDAPEELR FTETIFRDIS LNEIIVEIGG LKSEQGYVAR DIAILVRSNT EAVTTVKKLM
DQGIDVISGE ALLIANNLAV QLIVDTMKAL IGLDAETALY KANCIALYNS LRNVSADANH
YLNLNHTSFS SLSAVLPASL CASWQSWMQL PLPELVEILM ESYGLSRMEA HLPYLLAFRD
LAGNATRLGE KGIVAFLNWW DEEGIKKSLP SPESADAIQV ITIHKSKGLA FRAVFIPFCN
WEIKGKANSI FWVSAEETAF KALRGIPLKY NESLGNSAVA KAYYEELLYN HMDALNMLYV
ATTRARDYLY IATMAKKDPA RLGTIGDVLN KTFENDFDEN NTYEIIDEVP AKEAPKKKVK
EIELDHYPTT SRLAELYVAE QEQHAKHMLN IQKSGRRGSL LHDVLANVAN TEEVDNYLEG
LALEGLILEK EKAELRNSVL EVLNHADLQA ILNKATQSIT EKSIIDAEGK MHRPDRVLIS
ADEVIILDYK FTLQESKEHI TQVLNYKTLF TGMGYSKVSG YLFYAVTKQL KSI
|
|---|
| |