Gene Phep_4090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_4090 
Symbol 
ID8255224 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp4929163 
End bp4930005 
Gene Length843 bp 
Protein Length280 aa 
Translation table11 
GC content41% 
IMG OID644937754 
ProductMotA/TolQ/ExbB proton channel 
Protein accessionYP_003094343 
Protein GI255533971 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0811] Biopolymer transport proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAACG CACCAAAACC TACAACAGTA AAAAAAGAGA GCAGCTCGTC AGCTTCAAAT 
TTATTCGCAA CATTAACCAT TCCAATTTGC ATCATCATCG GGATCTGTGT TTACAAATTT
ATCTTCGGCG ATAGAGGTAA CTTTATTGAT GGCGCTGACC CTGATCTGCA TGAGACACTG
CCAAAAGTAG GTAACTACAT GGGTATGGCA TACAAAGGCG GAGTAATTGT GCCTATTCTA
TTGGGTATGT TCCTGATGGT AATTGTATTC TCTATCGAAC GTATGATCGT AATCAGCAAA
GCAACCGGCA AAAGCGGGCT GGATTCTTTC GTTAAAAAAA TCCAGGCACT TTTGAACTCA
AACAACATCG AAGCTGCTAT AGCTGAGTGT GACAAACAGG AAGGTTCTGT TGCAAACGTG
ATCAAATCAG GTTTGAGAAA ATACCGTGAG ATGGAAGTGG AGCCTAATAT GGATACTGAT
CAGAAATGTT TAGCTATTCA GAAAGACATT GAAGAAGCTA CTACTTTAGA GATGCCAATG
TTAGAGCAAA ACTTAACTGT AATTGCTACT TTGGTTTCTG TAGGTACATT AACAGGTCTG
TTGGGTACAG TAACAGGTAT GATCAAGGCC TTTGGTGGTT TGGCCAACTC TGGAGCTCCT
GATCAGGCTG CATTGGCAAC TGGTATTTCT GAGGCTTTGA TTAACACGGC TACAGGTATC
GGTACTTCAA CTTTCGCAAT TATCATGTAC AACATCCTTA CTTCTAAAAT TGATAAGTTA
ACTTATGCAA TTGATGAGGC AGGTTTCAGC ATCATCCAGA CTTACGCCAG CACGCATAAA
TAA
 
Protein sequence
MANAPKPTTV KKESSSSASN LFATLTIPIC IIIGICVYKF IFGDRGNFID GADPDLHETL 
PKVGNYMGMA YKGGVIVPIL LGMFLMVIVF SIERMIVISK ATGKSGLDSF VKKIQALLNS
NNIEAAIAEC DKQEGSVANV IKSGLRKYRE MEVEPNMDTD QKCLAIQKDI EEATTLEMPM
LEQNLTVIAT LVSVGTLTGL LGTVTGMIKA FGGLANSGAP DQAALATGIS EALINTATGI
GTSTFAIIMY NILTSKIDKL TYAIDEAGFS IIQTYASTHK