| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4050 |
|---|
| Symbol | |
|---|
| ID | 8255184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4893291 |
|---|
| End bp | 4895090 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644937714 |
|---|
| Product | GTP-binding protein TypA |
|---|
| Protein accession | YP_003094303 |
|---|
| Protein GI | 255533931 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.79027 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAA TTAGAAATAT AGCAATCATA GCCCACGTTG ACCACGGTAA AACTACACTG
GTTGATAAGA TCTTACACGC CTGTTCAATC TTCCGTGATA ACGAACAATC AGGAGATTTA
ATACTTGACA ATAATGATTT GGAGCGTGAA CGTGGGATCA CGATTGTTTC CAAAAACGTT
TCAGTACAGT ACAAAGATGT AAAAATCAAC ATCATTGATA CCCCTGGTCA CGCCGATTTT
GGTGGTGAGG TGGAGCGCGT ATTGAAAATG GCTGACGGTG TATTGTTATT GTGTGATGCA
TTTGAAGGCG CAATGCCTCA AACGCGTTTC GTAACACAAA AAGCATTGGC ATTGGGCTTA
AAGCCAATTG TAGTGGTAAA TAAGGTAGAT AAAGAGAACT GCCGTCCGGA AGAAGTATAT
GAGCAGATCT TTGAATTGTT CTTTAACCTT GAAGCTACGG AAGACCAGTT GGATTTTCCT
GTAATTTACG GTTCATCTAA ACAAGGATGG ATGAGTACGG ACTGGAAAGT ACCTACTACT
GATATTTTCG CCCTGTTAGA TGCTGTGGTA GCTAATATTC CTGCTGCACC CACTAACGAT
GGTACTTTAC AAATGCAGAT CACTTCATTA GATTACTCAT CTTTTGTAGG CCGTATTGCT
ATTGGCCGTG TACACCGCGG AGTAATTAAA GAAAACCAAC CGGTTACTTT GATCAAACGG
GATGGTAAAA TTGTAAAATC AAGGGTAAAA GAATTATATA CTTTCGAAGG TTTAGGTAAA
ATCCGTGCTA CTGAAGTAAA ATCAGGTGAT ATCTGTGCTG TTGTGGGTAT CGATGGTTTC
GATATCGGTG ATACCATTGC TGATTTCGAA GCTCCGGAGC AATTGCCGGT AATCAAAATT
GATGAGCCTA CGATGAACAT GTTGTTCACG ATCAACAACT CACCATTTTT TGGTAAAGAA
GGTAAATTTG TAACTTCTCA GCGTTTGAAG GAGCGTTTGT ATAAAGAGAT CGAAAAAAAC
CTTGCACTTA AAGTGGTAGA AACAGAATCT CCGGATGCTT ATCTGGTATA CGGAAGGGGT
ATTCTCCATT TATCCGTATT GATCGAGACC ATGCGCCGTG AAGGGTATGA AATTCAGGTA
GGCCAGCCAC AGGTAATCAT TAAAGAGATT GATGGTAAAA AATGTGAGCC TATTGAGACT
TTGATTGTTG ACGTACCGGG TGAAGTTGCT GGTAAAGTAA TTGAGCTGGT AACGCAACGT
AAAGGTGAGT TGCTGATCAT GGAGCCAAAA GGTGATTTAC AACACCTGGA ATTTGATATT
CCTGCACGTG GCATCATCGG ATTAAGAAAC AATGTATTGA CTGCTACTGG CGGCGAGGCC
ATAATGGCAC ACCGTTTTAA AGCTTATGAG CCCTGGAAAG GTACAATCCC GGGAAGGTTA
AATGGGGTAT TGGTTTCTAT GGAAAAAGGA AGTACTACTG CTTATTCTAT TGATAAACTG
CAGGACCGCG GACGTTTCTT TGTTGATCCG GGAGTAGATA TTTATGAAGG ACAAATCTTA
GGAGAGCACA TTCGTGATAA TGATCTGGTG ATTAATATTG TGAAAGGTAA AGCTTTGACC
AATATGCGTG CTTCCGGTAC AGACGACAGT CAGCGTATTG CTCCGGCCAT TAAGTTCTCA
TTGGAAGAGG CTATGGAATA CATCCAGGCT GATGAGTACA TTGAGGTAAC CCCCTTAAGC
ATGCGTTTAC GTAAGATTCA CTTAACTGAA GCTGCACGTA AAGTCAATAA AATCGTATAA
|
|---|
| Protein sequence | MQKIRNIAII AHVDHGKTTL VDKILHACSI FRDNEQSGDL ILDNNDLERE RGITIVSKNV
SVQYKDVKIN IIDTPGHADF GGEVERVLKM ADGVLLLCDA FEGAMPQTRF VTQKALALGL
KPIVVVNKVD KENCRPEEVY EQIFELFFNL EATEDQLDFP VIYGSSKQGW MSTDWKVPTT
DIFALLDAVV ANIPAAPTND GTLQMQITSL DYSSFVGRIA IGRVHRGVIK ENQPVTLIKR
DGKIVKSRVK ELYTFEGLGK IRATEVKSGD ICAVVGIDGF DIGDTIADFE APEQLPVIKI
DEPTMNMLFT INNSPFFGKE GKFVTSQRLK ERLYKEIEKN LALKVVETES PDAYLVYGRG
ILHLSVLIET MRREGYEIQV GQPQVIIKEI DGKKCEPIET LIVDVPGEVA GKVIELVTQR
KGELLIMEPK GDLQHLEFDI PARGIIGLRN NVLTATGGEA IMAHRFKAYE PWKGTIPGRL
NGVLVSMEKG STTAYSIDKL QDRGRFFVDP GVDIYEGQIL GEHIRDNDLV INIVKGKALT
NMRASGTDDS QRIAPAIKFS LEEAMEYIQA DEYIEVTPLS MRLRKIHLTE AARKVNKIV
|
|---|
| |