| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4039 |
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| Symbol | |
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| ID | 8255173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 4883058 |
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| End bp | 4883747 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644937703 |
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| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
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| Protein accession | YP_003094292 |
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| Protein GI | 255533920 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.36954 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGGC ATATATTTTT TGATTTAGAC CATACCATCT GGGATTTTGA CCGCAATGCA
CAAGAAACCC TGATGGAACT GTACGATTTG TATCAGCTGC AAAAGCTCGG CCTCAGTTCC
TGCCAGGAAT TTATAGCCGC CTATACCGAG AACAATCACC AGCTTTGGGC AGAATACCAT
GTGGGCCGGA TTACCAAAGA ACAATTACGT ACACAAAGGT TTAACAAAAC TTTCCGGCAG
CTGGGCATAC GGCCAGATCA GATCCCGGCA CAGTTTGAGG AAGATTATGT GCGCATCAGC
CCTACAAAAA CCAATCTGTT CAGGGGTTCA GAAAAAGTTT TGGCCTACCT GCAAAAAAAG
TATACCCTCC ATATCATCTC TAATGGATTT AAAGAAACTA CCCTCACCAA AATGAACGTG
TCGGGCCTCA ACCCTTATTT CCGGAATGTC ATCATTTCTG AAGATGTCGG TGTAAACAAG
CCACATCAGG CCATTTTTGA ATATGCCTTA AATAAAGCGG CCGCCCAGAA ACATGAAAGC
ATTATGATTG GCGACAGCCT GGAGGCCGAC ATCAGGGGCG CACAGGATTA TGGCATTAAA
GCCATCTATT TCAACCCCTT AAAAAAAGAA AAACCCGGAG ATGTAGACTG GCAGATCCAT
GACCTGGAAG AACTGCTCCT TCATTTTTAA
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| Protein sequence | MIRHIFFDLD HTIWDFDRNA QETLMELYDL YQLQKLGLSS CQEFIAAYTE NNHQLWAEYH
VGRITKEQLR TQRFNKTFRQ LGIRPDQIPA QFEEDYVRIS PTKTNLFRGS EKVLAYLQKK
YTLHIISNGF KETTLTKMNV SGLNPYFRNV IISEDVGVNK PHQAIFEYAL NKAAAQKHES
IMIGDSLEAD IRGAQDYGIK AIYFNPLKKE KPGDVDWQIH DLEELLLHF
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