Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3979 |
Symbol | |
ID | 8255113 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 4797174 |
End bp | 4799330 |
Gene Length | 2157 bp |
Protein Length | 718 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644937643 |
Product | polysaccharide lyase family 8 |
Protein accession | YP_003094232 |
Protein GI | 255533860 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAGGA GACTTTTTAT AATTATCTTA CTTATACAAT TGGTGCTTAC AGGTGTTGCA TCGGTTTTTG GTCAGCATAA AAGCAGCCCT CAGGTATGGG CAAAAGATAT TAAAACCATC ACAGAACGCC TTGCTGAAGA TTATCTGGCT GAAGGGGTTG ATTACCATAA AGTTGAAACG GTAGTTTCAT CTTTAAAACA GGATGGCAGC TGGCCTGGTA TTGATTATGT TACCGTTTCA AATGATTTCC CTGCCGGGCT TCACCTTAAA AAGCTGATGC TCATGGCCAA TGCGTATGCC AGGCAAGGCA GTGGTTTTTA TCGCAACAAA GAACTAAGAC AAAAAATCCT GCTCGGGTAT AATTACTATC TGGATAAAAA GCCAACATCA AAAAACTGGT GGTACAATGA TATAGGTGCC CAGCAGGATT ATATGGCAGG CTTGATCTTG ATGAAGGGCC AGATTGCAAA TGCAGACCTT ATCCGTTATG CTTCTTATCT AAAGGACCTT ACAGACAATC CTGCCCACAG GGGTATGAAC AGGATATGGG TGTCGGCCAT TACCATTGCC AAAGGATGCC TGGAAAACGA CTATTTATTA GTCGGCAAAG GCTTCCAAAG TGTAGCTGCT ACCCTGGTAA TCGCAAACGA ACAAGGCATA GAGGGCATAA AAACCGACAA TAGTTTTCAC CAGCACCGGC CACAATTGTA TTCAGGTGGA TATGGGATGG GCTTTGCAGA AAGTACAGCA AAGTTAATGG CCCTTTCTGC AAATACCTCT TTTCATGCTA CCTTCTCTGC CGAGAAAAAA AGAATATTTT CAGACCTGCT CTTGTACGGA CACCAGCTTT TCAGTTATCG TGGGGCGGTC GACTTTGGAA CTATTGGCAG AAATATCGCC CGTCCAAATT CAATAAGTCC CATCAGTCTG GTAACATTAG ATCAGATGAT GGTCATCGAC AGCCAGCGGA AGTCGGCATT CCGGGATTGG AAATCCCATA TACAAGGAGC GGCTTTCCCC AAACCTTTTC TGGGGAGCAG GTATTTCTGG AAGTCAGACA TCATGACCTA CCATGGAGAA GACTACTATC TGTCGGCAAA AGTAATCTCT ACCCGTACCA ACGGAACGGA AATGTTAAAC GCTGAGAACC TGAAAGGATA TAACCTTCCA TTGGGGGCAA CCAATATCAT GAAGACAGGA GGAGAATATA AAAATATCTT TCCCATATGG GACTGGACAC GTGTTCCCGG CACTACTGCA GTGATGAACC AATCGGCTAC AGTACTGCCC TGGTATTTAT TTGGAACAAA TGAATTTGCA GGAGGGATCA GCAATGGCGA AGCAGGCGTA ATTGCTTATG AGCACAGCTA TAATGGCGTA CAGGCAAAAA AGGCTTATTT TCTTGTGGAT GGCTCTATGC TTTGCCTGGG TGCAGGTATC AATGCAATCA GAACACAGCA GGTGGTCACC TCAGTTAATC AATGTTATCA GGATGGCGAG GTGGTTACTG GTGGAAAAGG CAATGTAGAA GGAACCCGCT TTACAGATAG CCTGAGCACC TCTAAAGGCG TGGAACTTCA TTGGGTTTAC CATGCCGGTG TGGGCTATAT CTTTCCTGCC GGAGGAAACC TTACCCTGAA GAACGCTGTG CAGACTGGCT CCTGGAAATC CATCAATCAA AGTGGAAGTG AGGAGCTCAT CAGCAAACCG GTTTTTAGTC TGTGGCTTAA CCATGGCACA GCTCCATCCG AAGACAGTTA CTGTTATATC GTGCGCCCGG AGCATTCTTT AGAAAGCTTT AAAAGTCATG TTCATGCAAA TGGCTTTATA ATCCTTAAAA ATGACAAGAA TATACAGGCC GTAAAATATG GACATAGCTA TTTTGTTGTA TTTTACAAAC CGGGAGCAGT TGATCTCGGA AAAAATCTGC AGGTTTCTTC AGATTCAAAA GCAGTATTCA TGATGGAAGA GAAAGAGGAT GGTTATCAGT TGTCGCTTGC AGATCCTACC CATCAGCAAA AAGAAGCGAA CTTATCCTTC AGCTTATTAA AAGATGCAGC TACCCCCTCT CAGGAAAATG GTACAACAAG ACTCAACTTT ATATTTCCAC AGGGTGACGA TCAGGGTAGT GCCGTAAACA GATTTTATAA AAAATAA
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Protein sequence | MARRLFIIIL LIQLVLTGVA SVFGQHKSSP QVWAKDIKTI TERLAEDYLA EGVDYHKVET VVSSLKQDGS WPGIDYVTVS NDFPAGLHLK KLMLMANAYA RQGSGFYRNK ELRQKILLGY NYYLDKKPTS KNWWYNDIGA QQDYMAGLIL MKGQIANADL IRYASYLKDL TDNPAHRGMN RIWVSAITIA KGCLENDYLL VGKGFQSVAA TLVIANEQGI EGIKTDNSFH QHRPQLYSGG YGMGFAESTA KLMALSANTS FHATFSAEKK RIFSDLLLYG HQLFSYRGAV DFGTIGRNIA RPNSISPISL VTLDQMMVID SQRKSAFRDW KSHIQGAAFP KPFLGSRYFW KSDIMTYHGE DYYLSAKVIS TRTNGTEMLN AENLKGYNLP LGATNIMKTG GEYKNIFPIW DWTRVPGTTA VMNQSATVLP WYLFGTNEFA GGISNGEAGV IAYEHSYNGV QAKKAYFLVD GSMLCLGAGI NAIRTQQVVT SVNQCYQDGE VVTGGKGNVE GTRFTDSLST SKGVELHWVY HAGVGYIFPA GGNLTLKNAV QTGSWKSINQ SGSEELISKP VFSLWLNHGT APSEDSYCYI VRPEHSLESF KSHVHANGFI ILKNDKNIQA VKYGHSYFVV FYKPGAVDLG KNLQVSSDSK AVFMMEEKED GYQLSLADPT HQQKEANLSF SLLKDAATPS QENGTTRLNF IFPQGDDQGS AVNRFYKK
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