| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3978 |
|---|
| Symbol | |
|---|
| ID | 8255112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4796012 |
|---|
| End bp | 4797118 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644937642 |
|---|
| Product | glycosyl hydrolase family 88 |
|---|
| Protein accession | YP_003094231 |
|---|
| Protein GI | 255533859 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4225] Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.380372 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAAAA AAGTATCGGG AGTGATGATC GCTTGCCTTT TATGTGTGGC TGCCGCGGCC
AAGGTGAACA TACCGGCCAA CAGTGATTCC GTATTAAAGA TGATGAGTAA GGTAGCCAAT
TGGCAAATGA AAGAATGGGA AGAGGGCAGG ATCATCAAAC TTCCTAAAAC AGAATGGGAA
AATGCTGCGA TGTATACAGG TTTTGTCGCC TTGAAACAAA TCGACAATCG GCCGGCCTAC
GATCGGTTTT TGTACAATAT TGGAGAAGAG TTGAAGTGGA ACACTGGAAA AGTCAGGCTC
TTTGCCGACG ATTATGCCAT TGCCCAGATG TATACAGCAA TGTATATGGA ACATCGGGCG
CCTAAAATGA TTGCCAAATG GATGGCGCTT GCCGATACCA TTGTAAATAA ACAATTTAAC
GAACCTTTAA TGGTCGTGCC GGGAATTAAC CACCGGGAAT GGGCCTGGTG TGACGCCCTC
TTCATGGGCC CTCCTGGAAT GGCCATGCTC TCCAAAGCAA CAGGAGACCC GAGATACCTT
AAAAAAGCAG ATACGCTGTG GTGGAAAACT TCGGGATATT TATACGACAG GAAAGAAAGC
CTGTATTACC GCGATGCAAG ATTTTTTGAA CGAAGGGAGG CCAATGGTAA AAAAGTTTTT
TGGTCGAGGG GCAATGGTTG GGTACTGGCA GGCCTGGCCA GGATGATGGA CAATATGCCC
GTTGATTTTG AAAACAGGAA AAAATATGAG CAGCAATTTA AAGAGATGGC AAAAAAAATA
GCAACTATAC AGCAGCCAGA TGGCAGCTGG CATGCCTCTT TGTACGACCC CCTTACATTT
AGTCTTAAAG AATCCAGTGG TACCGCATTT TTTTGTTATG GACTTGCATG GGGCATAAAC
ATGGGTTTAC TGCCTAAGAA GAAGTACCTT CCAGTGGTAG AAAAAGCATG GGAAGCTTTG
CTTTCTGCTG TCCATCTTGA TGGAAAGCTG GGCTATGTAC AGCCCATAGG AGATAAACCG
GTAAAAGCAG GCTATGAAAG CACTGATGTT TACGGTGTGG GTGCTTTTTT GCTTGCCGGA
TCTGAATTGT ATAAACTATA CAGATAA
|
|---|
| Protein sequence | MVKKVSGVMI ACLLCVAAAA KVNIPANSDS VLKMMSKVAN WQMKEWEEGR IIKLPKTEWE
NAAMYTGFVA LKQIDNRPAY DRFLYNIGEE LKWNTGKVRL FADDYAIAQM YTAMYMEHRA
PKMIAKWMAL ADTIVNKQFN EPLMVVPGIN HREWAWCDAL FMGPPGMAML SKATGDPRYL
KKADTLWWKT SGYLYDRKES LYYRDARFFE RREANGKKVF WSRGNGWVLA GLARMMDNMP
VDFENRKKYE QQFKEMAKKI ATIQQPDGSW HASLYDPLTF SLKESSGTAF FCYGLAWGIN
MGLLPKKKYL PVVEKAWEAL LSAVHLDGKL GYVQPIGDKP VKAGYESTDV YGVGAFLLAG
SELYKLYR
|
|---|
| |