| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3977 |
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| Symbol | |
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| ID | 8255111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4794373 |
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| End bp | 4796004 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 644937641 |
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| Product | glycoside hydrolase family 28 |
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| Protein accession | YP_003094230 |
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| Protein GI | 255533858 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.722531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATA GATTTAAACT GTTAATGATA ATATTTCTTG GATTCATTTA TAGTTGCAGG
ACTGAGAAAA ACTTTAATAT ACTTGACTTT GGAGCCGTCC GGGACGGGAA GACCTTAAAC
ACCGCCGCTA TTCAAAAGGC AATAGATGAA TGTAGCAAAA AGGGCGGACG GGTTGTAATT
CCGAAAGGTG TTTACCTGTC AGGTACTTTA TACATGAAAA GCAATGTAGA ACTACATATT
GAGGAAGGGG CGATACTTAA AGGCAGCGCT TCTTTTAAAG ATTATCCTGA CAACAAAGTG
ACCTACAAAA ATGCCTTTAC ACATTTTGAA GACGGAAAAC TTTATGCTAA TAAAGCATTT
ATTTTTGCGG AAAATGTGAG TAACATCTCG TTTACTGGTA AGGGAACTAT TAACGGCAGT
GGCGACAGTC CCGAATTTAA TCTTGGAAAT GACGATACGT CTATAAGCCG TTCAAGACCC
TGCATGTTGC TAATTATTGA CAGCAAGCAC ATTAAGCTGA ATGATTTGAC TTTAGAGAAC
TCAGCATACT GGCTACAAAA CTATCTGGGC TGTGAATTTC TTGAGCTAAA AGGTTTAAAG
ATTTATAACC AGTCAAACTA TAATCAGGAT GGAATGGATA TTGACGCCAA ACACGTACTG
GTAGAAGGCT GTACCTTAGA TGTTGATGAT GATGGTATTT GTTTTAAAAG TCATGATCCG
AAACGAATTG TAGAAGATGT GGTGGTCCGA AACTGTAAGA TATCCAGTAA CTGCAATGCC
ATTAAATTTG GCACCAAATC TATGGCCGGA TTAAAAAATG TCAGCATATC AAATTGCAAT
ATACAGAAAG CCTCTGCTGA CCCCATCAGA CATTGGCAAA AGACATTAAA ATTTATAGAC
CAACCCATAA CGGTAATTTC AGGCATTGCA CTTGAAGCTG TAGACGGAGG TATAATTGAC
AGCATCAGCA TTTTTAATAT CACGATGAAA GACGTACAAA CACCCCTATT TATTGTATTG
GGTAATAGAG GTAATAAGCC AATGGGCGAT AAGAATTTCT ACAATACCTC TGCAGGCAAT
ACAGCACAAC AAGCTGTAGG AAAAATAAGT AATATTCAGC TTAAAAATAT CAAGGCGACA
AGTCATAGCA AAATGGCCAG TTCTATAACA GCATTTCCAG GCCATTACAT AGAAAATATA
ACACTAGACA ACATTGCATT TAACATTATG GGAGCAGGAA CCCAACAGGA AGCCATTACC
CCATTGATAG AGAACCCGGG TGCATATCCA GAAAACAGGA TGTACGGACT GGCCTATCCT
GCAAGCGGAT TTTTTATACG GCATGTAAAA AACCTATCTT TAAATCACAT CAAATTAAGT
GTCAGAAAAC CCGATTATCG TTCATCTATA ATTTTGGATG ACGTATTGGG AGTTAACATA
AGCAATGTAA ATTTACCGGT GCCTGAAGGA AACACCGCTG CTATTGGTTT AAAAAACAGT
AAGAATATAA AAGTCATCAA TCCTGTTTTT AAATCTGAAA ACCAACCATT GATACAACTA
GATGGCACAG CTGAACCTGA AATTGCCATT GCCGGGTTTA AAAAATATAA AGGATGGCTA
ACGTCTTTAT AA
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| Protein sequence | MKNRFKLLMI IFLGFIYSCR TEKNFNILDF GAVRDGKTLN TAAIQKAIDE CSKKGGRVVI
PKGVYLSGTL YMKSNVELHI EEGAILKGSA SFKDYPDNKV TYKNAFTHFE DGKLYANKAF
IFAENVSNIS FTGKGTINGS GDSPEFNLGN DDTSISRSRP CMLLIIDSKH IKLNDLTLEN
SAYWLQNYLG CEFLELKGLK IYNQSNYNQD GMDIDAKHVL VEGCTLDVDD DGICFKSHDP
KRIVEDVVVR NCKISSNCNA IKFGTKSMAG LKNVSISNCN IQKASADPIR HWQKTLKFID
QPITVISGIA LEAVDGGIID SISIFNITMK DVQTPLFIVL GNRGNKPMGD KNFYNTSAGN
TAQQAVGKIS NIQLKNIKAT SHSKMASSIT AFPGHYIENI TLDNIAFNIM GAGTQQEAIT
PLIENPGAYP ENRMYGLAYP ASGFFIRHVK NLSLNHIKLS VRKPDYRSSI ILDDVLGVNI
SNVNLPVPEG NTAAIGLKNS KNIKVINPVF KSENQPLIQL DGTAEPEIAI AGFKKYKGWL
TSL
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