Gene Phep_3974 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3974 
Symbol 
ID8255108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp4788895 
End bp4791096 
Gene Length2202 bp 
Protein Length733 aa 
Translation table11 
GC content43% 
IMG OID644937638 
Productalpha-L-rhamnosidase 
Protein accessionYP_003094227 
Protein GI255533855 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.559372 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGA AATCAATAAT ATCGGCTTTT CTGTTATCCA TCCTCTATAT GGTTCCCGGA 
AGGGCTCAAA ACACTCCGGT CGGGTCACCA GTGGGACTGA TGTGTGACCT GGTGTCTGCA
ACAGTTGATG TTCGGCCGGT ACTTATATTT AACAAAACAC CTGCCTTTAG CTGGGAATTG
TCTGCAGAAA AGAAAGGGTT GGTCCAGATA GCTTATCAGC TATTGGTGTC TGATGATCTG
GAAGAACTAA ACCGGGATGT GGGCAAGGTT TGGGATTCCG GAAAAATAAT GAGCTCCCTA
TCTGCTGGAG TTTTGTTAAA AAATACCACA CTGAAACCAA ATACACGCTA TTATTGGAAA
GTTAAGATAT GGGATAGCCA GAAGGCGGCG AGCCCCTACT CCAGGGCCGT ATCATTTCTA
ACGGGCGATA CGCTGTCCGC TTATAAAAAT CCCTCTTATC CCTTACAAAT TACCGAACAG
CAGCCGGTTT CATTAAAGGC AATCGGCAAA ATTTACCAGG CCGATTTCGG CAAGGATGCT
TTTGCACAGC TCAAACTTCA GCTGTCTTCA ACATTTGGAG GTGATACCGT ATTTGTACGT
TTGGGCGAAA TTTTGGATAA GGATGGCAAC ATTGACCGGA AGCCCCCTGG AAAAATCCGT
TATGCACAAT ATGTTCTGGT TTTGCAAAAA GGTACACACA CCTACAAACT CAGTATTTAT
AAAGATAACA TCAATACCAG GCCTGCCGCC ATTAAAATGC CTGCTTACGT TGGCGAGGTA
ACCCCATATA GATATTGTGA AATCGAAGGT TATAAGCAGC AAATACAAAA AGAGTTATTA
ACCAGATTGT TTGTCCACTA TAAATTCGAT GACGAAGGCT CATCCTTCCA TAGTTCTGAT
TCCACTTTGA ATGCCATATG GGATTTATGT AAGTATTCGA TAAAGGCAAC GTCTTTTACA
GGGATGTATG TAGATGGCGA CAGGGAACGT ATCCCCTATG AAGCAGATGC TTACATCAAC
CAGCTCAGCC ATTATGCGGT AGACAAAGAG TTTACAATAG CACGTAATTC ACACGAATAC
CTCATTACAC ACCCTACCTG GCCAACGGAA TGGAACCTTC AATCTGTTTT AATCGCCTGG
AATGATTACC TGTATACCGG GGATATCCGC TCTGTAGCTC ATTATTACAA AGACCTCCAG
GCCAAAACCC TCCTTTCATT AACCGATTCA ACAGGACTGA TCAGTACGTT AAACGGACTA
TTGAATGACG ATGTTAAAGC TTCGATACAT CTGAAGGATG CAACCTTAAA AGACATCGTC
GATTGGCCAA GAAATACCGA AACAGATGGT TTTGTATTTA CAAAGTACAA TGCGGTGGTC
AACGCGTTTC ATTATCGGGC GCTTGTGCTC ATGGAACAGA TCGCAAAGCA GCTGGGTAAA
ACTTCCGATG CCCATATGTA CCGGAAAAGT GCAGCCAATG TTAAAGCCGC ATTCCAAAAA
ATGTTTTTTG ACCCGGCCAG GAATATTTTT GTTGACGGTA TTGGTACCGA TCATGCTTCA
TTGCATGCCA ACGCCTTTGC TTTAGCCCTG GGCTTGGTAA ACGATCAGCA TAAGAACAGC
GTTATGGCTT TCATCAGGTC AAAAGGCATG GCCTGTAGTG TTTATGGAAG CCAGTTTTTA
TTGGACGGGG TTTATGATGC CTGCGATGGC GACTATGGTT TGTCGCTGCT TACTTCAAAA
ACCGACCGGA GCTGGTTCAA TATGATTAAA GTAGGCAGTA CCATTACACT GGAAGCCTGG
GACAATAAAT ATAAGCCCAA TCAGGATTGG AACCATGCAT GGGGTGCTGC GCCTGCAAAT
ATCATTTCGC GTAAACTAAT GGGTATCGAA CCCATAACGC CCGGTTGGAC AAGGTTCTCT
ATAAAACCTC AAATAGGATC GCTGGAGCAT GCGCGTATCA CCGTTCCTAC TGTTAAGGGA
AAGATCAAGG TAGCCTATGT ACAAAGGAAA GATAGTTTCA CTATGGATGT TGAAATACCG
GGGAATACTT CGGCCCAGGT AAGCCTCCCG CTTAAAAATG AAAGCAGATA CGAAGTTTTG
TTAGATGGTA GTCCGGTTAA AACAAGCAGG GAAAATCAAA CAGTTCTGGT AGACTACTTA
GGCTCAGGCA AGCATACATT GCATATCGTT TATAAAAAAT AA
 
Protein sequence
MKKKSIISAF LLSILYMVPG RAQNTPVGSP VGLMCDLVSA TVDVRPVLIF NKTPAFSWEL 
SAEKKGLVQI AYQLLVSDDL EELNRDVGKV WDSGKIMSSL SAGVLLKNTT LKPNTRYYWK
VKIWDSQKAA SPYSRAVSFL TGDTLSAYKN PSYPLQITEQ QPVSLKAIGK IYQADFGKDA
FAQLKLQLSS TFGGDTVFVR LGEILDKDGN IDRKPPGKIR YAQYVLVLQK GTHTYKLSIY
KDNINTRPAA IKMPAYVGEV TPYRYCEIEG YKQQIQKELL TRLFVHYKFD DEGSSFHSSD
STLNAIWDLC KYSIKATSFT GMYVDGDRER IPYEADAYIN QLSHYAVDKE FTIARNSHEY
LITHPTWPTE WNLQSVLIAW NDYLYTGDIR SVAHYYKDLQ AKTLLSLTDS TGLISTLNGL
LNDDVKASIH LKDATLKDIV DWPRNTETDG FVFTKYNAVV NAFHYRALVL MEQIAKQLGK
TSDAHMYRKS AANVKAAFQK MFFDPARNIF VDGIGTDHAS LHANAFALAL GLVNDQHKNS
VMAFIRSKGM ACSVYGSQFL LDGVYDACDG DYGLSLLTSK TDRSWFNMIK VGSTITLEAW
DNKYKPNQDW NHAWGAAPAN IISRKLMGIE PITPGWTRFS IKPQIGSLEH ARITVPTVKG
KIKVAYVQRK DSFTMDVEIP GNTSAQVSLP LKNESRYEVL LDGSPVKTSR ENQTVLVDYL
GSGKHTLHIV YKK