| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3970 |
|---|
| Symbol | |
|---|
| ID | 8255104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4780133 |
|---|
| End bp | 4781086 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644937634 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003094223 |
|---|
| Protein GI | 255533851 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01784] conserved hypothetical protein (putative transposase or invertase) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.257716 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGC AAACAATAGC TGTAATACCG TTAAAGGAGC TAAACAATGA GGAAGAAAGG
CCCCGCCGAA AGGATGACGA GTTTCTTAAA GGAGCTTTTG AAGACAATTT TCCTGATTTC
TTACGTTTTG TATTCTCTGA TGCCGACGAA ATATTGGATT TTAATAGAGA GATAGAATTT
TTGAATAATG AGCTGTTCAC TATTATTCCA GACAGGGAAC GTAAAGGAGG GGGCCGCAGG
GCAGATCTTT TAGCTAAACT GTATCTAAAA GACGGTACAG AAAAGTGGGT ACTATTGAAT
GTAGAAATAG AGGGTGGTAA TGATCGTAAG TTTGGCCAAC GGGTATTTGA ATACAATTAC
CGCATCAGAG ATAAGTATAA AGTATCTGTA GCCTCTATTG CAGTATTTAC CGGTAAAAAG
ACGCAATTAA GGCCTACGGA ATACCTTGAC GAATTGCTGG GTACAGTACT TTCATTTAAG
TATACTGCAT ACCACGTTTT CGATCATCAG GAAGATGAAC TGTTAAAAAG CGACAACCCG
TTTTCCCTCA TTGCTCTGGC CTGCCAGAAA GCATTGCTGG AAGGTAAAAT ACCGGATGAA
GAACTTGCTG ATGAAAGGCT TGTCATTGTC AAGGCATTAC TGCGTCATGG TTATGACCGC
CAGCGGATTA TCAGTTTTAT ATTATTTCTT AAGAACTTCA TTTTTATTGA GAGTGAAGAA
ATTAATCGTA AATTTGATCA GCAGATCGAG GAACTAACTA AAGATAAAAA TCCTATGGGA
GTTATTGACG TTTTTAAAAA GTGGGAAAGA CAGGAAGCTA AAATAGAAGG AAAACTGGAA
GGCCGCCGTG AGGAGGCTTT AGAAATTGCC AGGGAACTAA AAAAAGAGGG CCTTACTATT
GAATTTATTG CTAAAACTAC CAAGCTCCCT ATAGCAGAAA TAGAAAAGCT ATAA
|
|---|
| Protein sequence | MEKQTIAVIP LKELNNEEER PRRKDDEFLK GAFEDNFPDF LRFVFSDADE ILDFNREIEF
LNNELFTIIP DRERKGGGRR ADLLAKLYLK DGTEKWVLLN VEIEGGNDRK FGQRVFEYNY
RIRDKYKVSV ASIAVFTGKK TQLRPTEYLD ELLGTVLSFK YTAYHVFDHQ EDELLKSDNP
FSLIALACQK ALLEGKIPDE ELADERLVIV KALLRHGYDR QRIISFILFL KNFIFIESEE
INRKFDQQIE ELTKDKNPMG VIDVFKKWER QEAKIEGKLE GRREEALEIA RELKKEGLTI
EFIAKTTKLP IAEIEKL
|
|---|
| |