| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3969 |
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| Symbol | |
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| ID | 8255103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4779402 |
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| End bp | 4779992 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644937633 |
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| Product | RNA polymerase sigma-70 factor |
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| Protein accession | YP_003094222 |
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| Protein GI | 255533850 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.886368 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGTGCTT ACAGCACATA TACCGATCAG GAACTGATTG CTTTGTTAAG GGCTGCGGAT
CATGCTGCTT TTACGGAAAT TTACAACCGT TATTGGAGTA CGTTGATGGC TATGGCCTAC
AACCATACCA AAGATAAATC GGCTGCCCAG GAAATTGTGC AGGAACTTTT TGTTGGTGTA
TGGAGCAGGA GGGACAAACT GGAGATCCAA ACCTTAAAAG CTTATCTGGC CACGGCAGTA
AAGTTCTCCA TATTTAAGCA AATAGAGCGG GAACGCAGGC GCAGGGATAT TGAGCATAAG
GAGTATAAAC TGAACAGTTA TGCAGATGAC GAACAAAAGC TTGAAGCTAA GTTTTTACAG
GAGTATATTA ACGGGCAGGT AGAGCTGTTG CCAGAAAAAT GCCGCCTGGT ATTTAATTAC
AGCCGGGTTG AAGGTATGAC CATACCAGAG ATAGCAAAGG AGATGAATAT TTCGGAAAAA
ACGGTTGAAG GACATTTAAC CAAAGGGATC AAAGTAATCA AAACCAATTT GAAAGATTCC
GGCATCCTGA TCATTGCTGT TTCTGCAAGC AGTCATTTAT GGATTAATTA A
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| Protein sequence | MGAYSTYTDQ ELIALLRAAD HAAFTEIYNR YWSTLMAMAY NHTKDKSAAQ EIVQELFVGV
WSRRDKLEIQ TLKAYLATAV KFSIFKQIER ERRRRDIEHK EYKLNSYADD EQKLEAKFLQ
EYINGQVELL PEKCRLVFNY SRVEGMTIPE IAKEMNISEK TVEGHLTKGI KVIKTNLKDS
GILIIAVSAS SHLWIN
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