| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3933 |
|---|
| Symbol | |
|---|
| ID | 8255067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4734063 |
|---|
| End bp | 4735316 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 644937597 |
|---|
| Product | putative LPS biosynthesis protein |
|---|
| Protein accession | YP_003094186 |
|---|
| Protein GI | 255533814 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03573] N-acetyl sugar amidotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0710659 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTATT GTTCACGTTG TTTATATCCT TCTAATCATC CCTTGTATAT TACTTTTGAT
GAAGAAGGGG TATGTAGTGG TTGTAGGGTT CATGAAGAAA AAGATGTTCT TGATTGGGGA
TCTCGTGAGG AGAAACTGAA GAAAATTTTG ACTGCCTATA AAAATAAGTC TGAAAATAAT
TATGATTGCA TAATACCTGT AAGTGGGGCA AGAGACTCTT ACTTCATCGT ACACATGGTT
AAAAATGTAT ATGGTATGAA CCCTCTTCTT GTTACTTACA ATAAACAGTA CAATACGGAT
GTAGGTGTTC GTAATCTTGC TAATCTAAGA ATTACCTTTA ATTGTGATAT TATGACACTC
ACAGTTAACC CTGAATCTGT AAAAAAAGTT ACAAGAGCAT CGATGCGTAA GATGGGAAGT
ATTTATTGGC ATTGTATTGC AGGTCAAACT GTTTATCCAG TGCAGGTTGC CGTTAAGTTT
AAAATTCCGC TTATAATTTG GGGAGCGCAT CAAGGGATTG ATCAGGTCGG AATGTTTTCT
CATCTTGATG AAGTAGAGAT GACCCGTAAG TATCGAAAAG AACATGATTT AATGGGTTAT
GAAGCTTCGG ATTTAATAGA TGAATTTGAT GAGATTTCAT CAAAAGATAT AGTACAGTAT
GAATATCCAG ATGATAAAGA AATTGAACGG GTAGGTGTTA GGGGAATTTA TCTTAATAAT
TTTATTCGTT GGGATACAAG AGCGCAACAT GAAAAAATGA TTGACCTGTA CGGCTATGAA
TCCCTCGAAC AGAGACGTAC TTTTGATACT TATAATGACG TAGATTGTTA TAATTATTCA
GATGTCCATG ATTACATCAA ATTTATTAAA CATGGTTATG GAAAAGTAAC AGACCATGTT
TGTAGAGAGA TTCGTCTTCG CAGGATGACT AGGGAAGAAG GAATGCGTTT GGTAAAGGAG
TATGAGAGTA AAGACGTTAA AAATCTGGAC TTATTTCTGG ATTGGATAGG GATGACTAAG
AATAGTTTCT ATTATATAAT AGACCAATTC AGAAATAAAG AGATCTGGAA AAGGAATGAC
CAATGGGAAT GGAAACTTCA AATTGACAAA TTTTCCGATT TAGAAGATAA CAAAAAACAA
GATAGTTGTC TTAAGATAAA AGAAAAGCAC ACCCCTTTTA TAATTACACC AACGGGAAAA
TCTACTGATG CAAAGCAACA GTATATTTTA ATTGGCAAAG GTGTTGCAAA CTAA
|
|---|
| Protein sequence | MKYCSRCLYP SNHPLYITFD EEGVCSGCRV HEEKDVLDWG SREEKLKKIL TAYKNKSENN
YDCIIPVSGA RDSYFIVHMV KNVYGMNPLL VTYNKQYNTD VGVRNLANLR ITFNCDIMTL
TVNPESVKKV TRASMRKMGS IYWHCIAGQT VYPVQVAVKF KIPLIIWGAH QGIDQVGMFS
HLDEVEMTRK YRKEHDLMGY EASDLIDEFD EISSKDIVQY EYPDDKEIER VGVRGIYLNN
FIRWDTRAQH EKMIDLYGYE SLEQRRTFDT YNDVDCYNYS DVHDYIKFIK HGYGKVTDHV
CREIRLRRMT REEGMRLVKE YESKDVKNLD LFLDWIGMTK NSFYYIIDQF RNKEIWKRND
QWEWKLQIDK FSDLEDNKKQ DSCLKIKEKH TPFIITPTGK STDAKQQYIL IGKGVAN
|
|---|
| |