| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3919 |
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| Symbol | |
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| ID | 8255053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4717467 |
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| End bp | 4719425 |
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| Gene Length | 1959 bp |
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| Protein Length | 652 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 644937583 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_003094172 |
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| Protein GI | 255533800 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0124304 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTACAA AACTACAAAT TGTATCTCGC TGGGTTATTT TTACGATTGA TATTTGTTTA
AGTGTCATTG CATTGTTATT TGCGATCATT TTGCAAAATA ATTTCATTAT CGATACAATA
GATTTTCTTG CTTTTTATAA AGCTGTAGTT TTAGTGATTA TAGTGAACTC TTTTGTATTT
TACAGCGTTA AAACATTTGC AGGCATTGTT AGATATACTT CTGCACAGGA TTCTTTCAGG
ATTTTATTTG CTGTTGTTCT GAGTTCATTG ATCCTGTTTT TTACCCATGC ATTGGCAATA
GTGATTACAG GTGAGCGTGT GATTAGTAGT GTAGCCATCA TCACCTATAC TTTATTTAAT
TTCTTAATGC TGATTACTTA CCGGATCATT GTAAAGTACT TTTTTATGTA CATAAAGAAT
GCTAATCTGG ACAAAAGAAG AATTATCATT TATGGTGCTG GAGAGGCAGG TGTAGCTACC
AAAAGAACTT TTGACCATGA TCCTAAAATA AATAAGACCA TTATTGCCTT TGTGGATGAT
GATCTGCGGA AAGTAGGTAA AACCATTGAT GGCGTGAGAA TTCTTGATGC AGCACAATTG
GAAGATCTGA TTACAAAACA TGAAGTGGAT GAAGTGATCT TTGCCTCTTA TACCATTCCA
TCGGAGCGCA AGAACCAGGT GGTGGATATA TGTTTAGAAA ATGATGTTAA AATATTAAAT
ATACCTTCAC CCGAGGTTTG GGCTAAGGGA CATGTGACCA CGGCACAAAT CCAGAATATC
AATATTGAGG ACTTGCTAAA CAGGAAGACA ATCGACATTG ATATAGAAGG TATTCAGAAC
CAATTGAAAG GGAAAAGAAT ACTGATAACT GGAGCAGCAG GCTCTATAGG CAGTGAGATT
GTAAGACAGT TGTTAAAGTT TGAAACAGGG CTGATTATTT TATGTGACCA GAGCGAAACG
GCTTTGCATA ACATTTACCT GGAACTGGAA GAGACTCATG TAAATACCAA TTTCCATGCT
TTTATCGGGG ATGTGAAAGA CCAGAAACGG ATGGAGACTT TGTTCAATAC TTATAAACCA
CATTACGTAT ACCACGCAGC GGCCTACAAG CACGTGCCTT TGATGGAAGA TAACCCTGCA
GAGGCAATTA AAACAAATGT AATGGGCACA AAAACCATTG CTGATCTTTC GGTTAAGCAT
GGGGTGCAAA AATTTGTAAT GATCTCTACA GATAAGGCCG TAAATCCTAC CAATGTAATG
GGTGCTTCAA AACGGATTGC GGAGATTTAT GTACAGTCAC TAAATAATTC CCTGAATAAC
CCCGATCTGA TCTTCTCCAA TGGATTGAGT TATTTAAATG ATTCCAATAT CAAACCCATC
ACAAAGTTCA TCACTACTCG GTTTGGGAAT GTATTGGGTT CAAATGGTTC TGTCATTCCT
AGATTCAAAC ACCAGATCGA AAATGGTGGT CCGGTTACCG TTACCCATCC AGAAATTACC
CGCTATTTTA TGACCATACC CGAAGCTTGT CGTTTGGTAT TGGAAGCGGG TTGCATGGGT
AAAGGAGGCG AGATTTACGT ATTCGACATG GGTAAATCAG TAAAGATTGT GGAATTGGCC
AAGAAAATGA TTCGCTTAGC GGGTTTAGTT CCTAACCAGG ACATCAAGAT TTCCTATTCA
GGTTTGAGGC CTGGTGAAAA GCTATTTGAA GAGCTTTTAA ACGATAGTGA AATCACTAAG
CCTACACACC ATGAAAAAAT TATGATTGGG CAGGTTAGAG AGTATATTTT TAATGAAATA
GAAACCCAGA TTTATCAGTT GCTAAATCAC GCAAGTTCTG GCAATACGAG GCAGGTAGTA
AGGCAAATGA AGGTCATTGT TCCTGAATTT ATTAGTAAGA ATTCTGTATT TGAAGAATTA
GACGCAGAGG TTCCAGTAGA AGAAAGCCCC CTAAAATGA
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| Protein sequence | MFTKLQIVSR WVIFTIDICL SVIALLFAII LQNNFIIDTI DFLAFYKAVV LVIIVNSFVF
YSVKTFAGIV RYTSAQDSFR ILFAVVLSSL ILFFTHALAI VITGERVISS VAIITYTLFN
FLMLITYRII VKYFFMYIKN ANLDKRRIII YGAGEAGVAT KRTFDHDPKI NKTIIAFVDD
DLRKVGKTID GVRILDAAQL EDLITKHEVD EVIFASYTIP SERKNQVVDI CLENDVKILN
IPSPEVWAKG HVTTAQIQNI NIEDLLNRKT IDIDIEGIQN QLKGKRILIT GAAGSIGSEI
VRQLLKFETG LIILCDQSET ALHNIYLELE ETHVNTNFHA FIGDVKDQKR METLFNTYKP
HYVYHAAAYK HVPLMEDNPA EAIKTNVMGT KTIADLSVKH GVQKFVMIST DKAVNPTNVM
GASKRIAEIY VQSLNNSLNN PDLIFSNGLS YLNDSNIKPI TKFITTRFGN VLGSNGSVIP
RFKHQIENGG PVTVTHPEIT RYFMTIPEAC RLVLEAGCMG KGGEIYVFDM GKSVKIVELA
KKMIRLAGLV PNQDIKISYS GLRPGEKLFE ELLNDSEITK PTHHEKIMIG QVREYIFNEI
ETQIYQLLNH ASSGNTRQVV RQMKVIVPEF ISKNSVFEEL DAEVPVEESP LK
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