Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3887 |
Symbol | |
ID | 8255021 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 4676809 |
End bp | 4679523 |
Gene Length | 2715 bp |
Protein Length | 904 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644937551 |
Product | alpha-L-rhamnosidase |
Protein accession | YP_003094140 |
Protein GI | 255533768 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAAC TCAGCGCATT ATTTTTACTC ATTCATTTCT CAGTTTTTGT ACAGGCACAA AAACTTGAGG TAGGACAACT GACCTGCAAC TATAAACAAA ATCCGATAGG CACCGATGTA TTACAGCCTC AATTTAGCTG GAAGTTAAGC GCTACTGAAA GAAATGTAAT GCAGAAAGCT TATGAACTAA GGGTGGCAAG CAGTGACAAG GACCTCTTAA ATGGAAAAAA CCTTGTCTGG CAAACTGGTA AGGTAAATTC AGATCAATCT GCCCATGTTA TTTATAAAGG AAGCGCACTG CAGGCCAAAC AACGCTATTA CTGGCAGGTA CGTGTATGGG ACAACAATGG GAAAGCATCT GACTGGAGCG TAGTAAACTT CTGGGAGATG GGGTTGTTGT CGCCAAAAGA CTGGTCGGCA AAATGGATCC AGACCGCCCG CGATACAGAA GGCAAAGTAG GACCCGCACC GATGTTTGGC CGTAGCTTTA CGGTAGCAAA AGAAATAAAA AATGCGAGAC TCTATATCAC CGCACATGGT CTTTATGAAG CAAAACTAAA CGGAAAGAAG ATTGGCGACC ACTATTTTAC ACCGGGCTGG ACAAGTTACC ACAAACGCTT ACAATATCAG ACCTATGATG TGACACAGGC TTTAAAAGCG GGTAAAAATA CAGCACTGGT TACCATTGGT GACGGATGGT ACCGTGGAAA CCTGGAATTT AACAATAAAC GCAATTTATA TGGTAAAGAG GTTGGGCTGT TGTTCCAGCT GGAAATTGAA TATGCAGATG GTAAAAAAGA AACCATCAGT TCTGATCAGG ACTGGAAAAC CTCTTTTGGC GGTCCGGTAA AGGCCTCCGA TATTTACAAT GGCGAGACTT ATGACGCCCG ACTGGAAAAA AATGCGCTGG TACAGGATTT TAATACGGGC GATTGGCAGC AGGCTAAAGT GGTTGACCTG AAAATGGATA ACCTGGTTGC GCCGCTCGGG CCAACCGTAA GTAAGCACGA ACATTTTGCC CCACTAAAGG TCATCAAAAC CCCTAAAGGT GAAATCGTGA TCGATTTTGG CCAGAACCTG GTAGGTTGGG CCCAACTGAA AATTAAAGGA AAAGCAGGAG ATACCCTGAC CATTAACCAT GCCGAGGTAT TGGATAAAGA CGGTAATTTT TATACAGAAA ACCTGAGAAA GGCCAAACAG GAAAATAAAT ATATACTGAG CGGCACAAAA GTAGATGTGC TGGAACCACA TTTTACTTTT CAGGGCTTCC GTTATATTAA AATTACGGGT TATAAAGGCA AACTGGACAG CACTACTGTA AATGCCATTG CAGTATATTC AGACATGAAA CCTACAGGTC TGTTCTCTAC TTCAAACCCC TTGCTCAACC AGCTGCAAAG TAATATCCAG TGGGGGCAAA AAGGGAATTT TGTAGATGTG CCTACCGACT GTCCGCAGCG TGACGAGCGT TTGGGCTGGA CTGGCGATGC ACAGGTGTTC TTCAAAACAG CTGCCTACAA TATGGATGTG GCCGGATTTT TCGACAAATG GCTGCATGAC CTGAAAGTAG ACCAGCACCC AACCGGAAAT GTGCCAGTGG TAATCCCTGA CGTGCGTACG ATAAAGAATG CAGGTTCTGC CGGATGGGGC GATGTGGCCA CCATCATCCC ATGGGATTTT TATCGCGCTT ACGGAGATAA GGAACTGCTT TCGCGTCAAT ACAGCAGTAT GAAAGCCTGG GTAGAATATA TCCGCAGCAT CAGCAAAAAT AACCTGTGGA ACAGCGGGCC GCATTATGGC GACTGGCTTT TCTATACGAT GGCCGATGAC CGTGATGGTA AGGCAGCAAT TACAGACAAA TTTTTTATCG CACAAGCTTT TTATGCGCAT TCTACTCAAA ATCTGATCAA TGCAGCTACA GTATTGGGCA ATACAGAGGA CGTAAAAGCT TATACTGAAC TGCTCAAAAT AATTAAAAAA GCTTTCCTGG ATGAATATGT TACCCCTTCA GGAAGACTGG TTTCCAGCTC TCAGACGGCT TATGTACTGG CCCTGAATTT TGATCTTTTG CCTGAAAATT TAAGGGCCCA GGCCGCACAA AGACTGGCAG ATAATGTGGC AGCTTATGGC AACCACCTGA CAACAGGGTT TTTAGGTACG CCATACCTGT GCCATGTCCT TACCCGTTTT GGATACAATG ATGTTGCATA CAAGCTGTTG TTGCAGGATA CCTATCCGTC ATGGCTATAT CCTGTTAAAA AAGGAGCCAC TACCATTTGG GAAAGATGGG ATGGCATTAA ACCTGATGGT TCTTTTCAGG CAGTGAGCAT GAATTCTTTT AACCATTATG CTTATGGAGC AATTGGCGAC TGGATGTACC GTACCGTAAC GGGGATTAAC GAAACAGCAC CAGGATATAA AGAGATCAGC ATTGCTCCAA AACCTGGAGG CGATCTTAAA AATGCAGGTG CCGAGCTGGA AACCATGTAT GGCAAAGTAA AATCTGCATG GTCTGTTGCT GATGGTAAAA CTAAAATTGA CATTGTCGTT CCCCCTAATA CCACTGCCAG AGTTATTTTG CCGGGAACCG GAAATGCTGT GGTAACGGAA TCTAACGTCG CCCTCAATAA AGCCAAAGGA TTAAGAGCCA TTAAAAATGT GGATAACAAT ACCGAGCTTA CTGCAGGTTC TGGTACTTAT CATTTTGAAT ATTAA
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Protein sequence | MNKLSALFLL IHFSVFVQAQ KLEVGQLTCN YKQNPIGTDV LQPQFSWKLS ATERNVMQKA YELRVASSDK DLLNGKNLVW QTGKVNSDQS AHVIYKGSAL QAKQRYYWQV RVWDNNGKAS DWSVVNFWEM GLLSPKDWSA KWIQTARDTE GKVGPAPMFG RSFTVAKEIK NARLYITAHG LYEAKLNGKK IGDHYFTPGW TSYHKRLQYQ TYDVTQALKA GKNTALVTIG DGWYRGNLEF NNKRNLYGKE VGLLFQLEIE YADGKKETIS SDQDWKTSFG GPVKASDIYN GETYDARLEK NALVQDFNTG DWQQAKVVDL KMDNLVAPLG PTVSKHEHFA PLKVIKTPKG EIVIDFGQNL VGWAQLKIKG KAGDTLTINH AEVLDKDGNF YTENLRKAKQ ENKYILSGTK VDVLEPHFTF QGFRYIKITG YKGKLDSTTV NAIAVYSDMK PTGLFSTSNP LLNQLQSNIQ WGQKGNFVDV PTDCPQRDER LGWTGDAQVF FKTAAYNMDV AGFFDKWLHD LKVDQHPTGN VPVVIPDVRT IKNAGSAGWG DVATIIPWDF YRAYGDKELL SRQYSSMKAW VEYIRSISKN NLWNSGPHYG DWLFYTMADD RDGKAAITDK FFIAQAFYAH STQNLINAAT VLGNTEDVKA YTELLKIIKK AFLDEYVTPS GRLVSSSQTA YVLALNFDLL PENLRAQAAQ RLADNVAAYG NHLTTGFLGT PYLCHVLTRF GYNDVAYKLL LQDTYPSWLY PVKKGATTIW ERWDGIKPDG SFQAVSMNSF NHYAYGAIGD WMYRTVTGIN ETAPGYKEIS IAPKPGGDLK NAGAELETMY GKVKSAWSVA DGKTKIDIVV PPNTTARVIL PGTGNAVVTE SNVALNKAKG LRAIKNVDNN TELTAGSGTY HFEY
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