Gene Phep_3885 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3885 
Symbol 
ID8255019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp4672655 
End bp4673803 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content45% 
IMG OID644937549 
Productrhamnose-proton symporter 
Protein accessionYP_003094138 
Protein GI255533766 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGTAC ATGACGGAAG TCAACTGTCA TTCCTCTATT TTAGTCGGAC CAAATTTAAA 
ACCTTAAACA TGCAGATTCT ATTAGGAGTT ATTTTTCATT TTATCGGCGG CTTTGCTTCC
GGCAGTTTCT ATATCCCTTT CAAAAAAGTT AAAGGCTGGG CCTGGGAAAC TTACTGGATT
GTTGGTGGTC TGTTCTCCTG GTTAATCGTA CCTCCACTTG CAGCTTACCT CACCATCCCC
GGTTTTATGG ACATCATTGT TCAAACCGAT GGCAAGATCT TATTGCTTAC TTACTTCTTT
GGTCTGTTAT GGGGCATTGG GGGCCTTACA TATGGTTTGG GTGTCCGTTA TCTGGGCATA
TCGCTGGGCA GTACCATTAT ACTTGGCCTG TGTTCGGTGT TTGGCGCCTT GATCCCTTCC
TTGTATTATG ATTTTAACCC TACAGCTGGT AAGGACAGCT TATCAGATAT GGCTGCTTCC
CAATGGGGGC AAATGGTATT GCTTGGTCTT TTGGTTTGCG TAGTGGGTAT TGTGGTATGC
GGGCTGGCGG GCAGCATGAA AGAGAAGGAC CTGGTTGCTT CGGGCAAGGC CGATCCTTCA
AATAAAGAAT ATAAACTGGG TATCGGTTTA ATCGTATCCA TTGTATCGGG TATTTTAAGT
GCCTGTTTTG CCTTTGGTAT TGATGCCGGT AAAGACATGG CCCATCATGC CAATGAGGCC
TGGAAAGCAC TGAATCCCGG ACAGGGTGAA TTCCTGTTCC AGAACAATGT AACCTATGTG
GTAATCTTAT GGGGTGGTTT AACCACCAAC CTGTTCTGGT GTATGCTGCT CAATTCCCGC
AATAAAACCT TTGGCGATTA TTCGGATAAA AAAGCCCCAC TGCTTAAAAA TTATATTTTC
TCGGCACTGG CCGGAACCAC CTGGTTTTTG CAGTTCTTTT TTTATGGCAT GGGCGAAAGC
AAGCTGGGTA ACGGTGCCAG TGGCTGGATC CTGCACATGG CCTGTATCAT TTTGGTGGCC
AATGGCTGGG GCCTGTTCTT TAAAGAATGG TCGGGAGTAA AGAAAAAGAC TTTTGGAACC
GTAGTTGCGG GCATTGTAAT CCTGATCTTA TCCATACTCA TTGTGGGTTA TGGCAATTCA
ATTAAATAG
 
Protein sequence
MTVHDGSQLS FLYFSRTKFK TLNMQILLGV IFHFIGGFAS GSFYIPFKKV KGWAWETYWI 
VGGLFSWLIV PPLAAYLTIP GFMDIIVQTD GKILLLTYFF GLLWGIGGLT YGLGVRYLGI
SLGSTIILGL CSVFGALIPS LYYDFNPTAG KDSLSDMAAS QWGQMVLLGL LVCVVGIVVC
GLAGSMKEKD LVASGKADPS NKEYKLGIGL IVSIVSGILS ACFAFGIDAG KDMAHHANEA
WKALNPGQGE FLFQNNVTYV VILWGGLTTN LFWCMLLNSR NKTFGDYSDK KAPLLKNYIF
SALAGTTWFL QFFFYGMGES KLGNGASGWI LHMACIILVA NGWGLFFKEW SGVKKKTFGT
VVAGIVILIL SILIVGYGNS IK