| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3883 |
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| Symbol | |
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| ID | 8255017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4669219 |
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| End bp | 4670493 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644937547 |
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| Product | Xylose isomerase domain protein TIM barrel |
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| Protein accession | YP_003094136 |
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| Protein GI | 255533764 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4952] Predicted sugar isomerase |
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| TIGRFAM ID | [TIGR02629] L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATATTAG AGAACTATCA GATAGATTCA CATAACAATG AGCTGTTGGC TAAACATCAG
CGTAAACTTA CCTTTGTTAA AGATGAGCTT GCCAATGCAG AGGAGATCAT ACAGAAACTG
ATTGACTTCC AGATCGGGAT TCCCAGCTGG GCATTGGGCA CAGGGGGTAC ACGTTTCGGA
CGTTTCTCCT CGGGTGGTGA GCCCCGCAAC ATCGAAGAAA AGATTGAAGA CATCGGCCTG
CTGCATAAAT TAAATGCAGC AAGCGGAACC ATATCCCTGC ACATTCCATG GGATACGGCT
GATAATGTAC CGGCTATAAA AGCTTTGGTA GCACAGCATG GCCTGGGCTT TGATGCCATG
AACTCGAATA CCTTTCAGGA CCAGGCCAAC CAGGCGCACA GCTATAAATT CGGTTCCTTA
CAGCATGTAA ACAAGGCGGT AAGAAAACAG GCCATTGAAC ACAACATTGA AGTGATCCGT
CAGGGTGTGG AGCTGGGCTC TAAGGCACTT ACGGTATGGC TGGCAGATGG CTCCTGTTTC
CCCGGACAGC TGAACTTCAG GAAAGCCTTC CAGAACACAT TGGAAAGCCT GCAGGAAATT
TATGCAGCTT TGCCGGCCGA CTGGAAAGTA TTTGTAGAAT ATAAGGCTTT TGAGCCCAAC
TTCTATTCTA CTACCGTGGG CGATTGGGGG CAGTCCTTAT TGTACGCCAG TAAACTAGGC
CCTAAAGCCT TTACACTGGT CGACCTTGGT CACCACCTGC CAAACGCCAA CATAGAGCAG
ATCGTTTCTT TATTGCTGAT GGAAGGAAAG CTGGGTGGGT TCCATTTCAA CGATTCCAAA
TACGGCGATG ACGACTTAAC GGCAGGTAGC ATGAAGCCTT ACCAGCTGTT CCTGATCTTT
AATGAACTGG TGGAAGGAAT GGATGCACGT GGTATGGACC ACAGGAAAGA CCTGGGCTGG
ATGATCGATG CCTCACATAA TGTTAAAGAC CCCTTAGAAG ATCTTTTACA ATCGGTTGAA
GCCATTATGC TGGCCTATGC GCAGGCACTG TCAGTAGACC GTAAAGCATT GCAGCAGGCC
CAGGAAGAAA ATGATGTGGT ACGTGCCCAG GAAATATTAC AACAGGCATT CCGTACCGAT
CTGCGACCTT TGGTAGCAGA AGCACGTTTG CGTGCAGGTG CAGCCCTGGC TCCGCTTGAG
CTGTTTAGAA ATAGCAAGGT AAGACAAGAA CTGATAAAAA GCCGTGGTTT AAAAACTGTA
GCAACTGGAT TATAA
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| Protein sequence | MILENYQIDS HNNELLAKHQ RKLTFVKDEL ANAEEIIQKL IDFQIGIPSW ALGTGGTRFG
RFSSGGEPRN IEEKIEDIGL LHKLNAASGT ISLHIPWDTA DNVPAIKALV AQHGLGFDAM
NSNTFQDQAN QAHSYKFGSL QHVNKAVRKQ AIEHNIEVIR QGVELGSKAL TVWLADGSCF
PGQLNFRKAF QNTLESLQEI YAALPADWKV FVEYKAFEPN FYSTTVGDWG QSLLYASKLG
PKAFTLVDLG HHLPNANIEQ IVSLLLMEGK LGGFHFNDSK YGDDDLTAGS MKPYQLFLIF
NELVEGMDAR GMDHRKDLGW MIDASHNVKD PLEDLLQSVE AIMLAYAQAL SVDRKALQQA
QEENDVVRAQ EILQQAFRTD LRPLVAEARL RAGAALAPLE LFRNSKVRQE LIKSRGLKTV
ATGL
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