| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3860 |
|---|
| Symbol | |
|---|
| ID | 8254994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 4631309 |
|---|
| End bp | 4633237 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644937524 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_003094113 |
|---|
| Protein GI | 255533741 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.494396 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGATA TTAACGGCCT GTTTTTACCC AACATAAATT ATCCTGCTGA TTTAAAGCAG
TATAAAGAAC AAGATCTGGA ACAAATTGCT CAGGAATTAC GTCAGTACAT CATTGACGTG
GTGAGCGTAA ACGGCGGACA TTTTGCCGCC AGTTTAGGTG TTGTGGAATT AACGGTCGCT
TTACACTATG TATTGAACAC ACCTTACGAC AAGCTGGTCT GGGATGTTGG GCACCAGGCA
TATGGGCACA AAATACTAAC CGGAAGAAAA GACGTATTTC ATACCAACCG TATTTTGAAT
GGCATCAGTG GCTTTCCAAA GATCAGCGAA AGTGAATACG ATACTTTCGG CGTAGGCCAC
TCCTCCACTT CCATTTCTGC TGCTTTAGGT ATGGCTGTAG CTTCACACTA TAAGGGAGAA
ACAGACCGCC AGCACGTAGC TGTAATTGGC GATGGGGCAA TGACCGCAGG TCTTGCTTTC
GAAGGCTTAA ACCATGCGGG CATCGAAAAT TCGAACCTGC TGGTAATTTT GAATGACAAC
TGCATGTCGA TAGACCCTAA TGTTGGCGCT TTAAAAGAAT ATTTAACAAA CATTACAACG
TCCAAATCAT ATAACCGCTT TCGCGAGGAC ATCTCGCAGG TATTGTTCAA ACTTTCTGAA
CTGGGGCCAA ATGCACATAA GTTTGTAAAG AAAATAGAGA AGAGCATTAA AGGTACATTG
CTGAAACAGA GCAATATGTT TGAGGCACTG AACTTCAGGT ATTTTGGTCC GGTTGACGGG
CATGATGTAC AACGGTTGGT ACAGGTGATC AGAGATTTAA AAGACATTCC CGGCCCTAAG
CTTCTACACT GTGTTACTTT GAAAGGCAAA GGTTTTGCCC TGGCCGAAAA AGACCAGACC
AAATGGCATG CACCAGGTTT ATTTGACAAG ATCACCGGTG AGATCAAAAA ATCTGTATCT
GATAAACCCC AGCCTCCAAA GTATCAGGAT GTTTTTGGGC ATACCCTTGT TGAACTAGCG
GAAGCCAATA AAAAAATAGT AGGGATTACC CCTGCCATGC CCTCCGGCTC ATCAATGAAC
ATCATGATGA AGGCAATGCC GAACCGTGCT TTTGATGTGG GTATTGCGGA ACAGCATGCG
GTTACGTTTT CGGCAGGACT GGCAACACAA GGGCTTGTAC CGTTTTGTAA CATCTATTCG
AGCTTTATGC AGCGGGCTTA CGACCAGGTG ATCCATGATG TAGCCATACA GAATTTAAAT
GTAATATTTT GCCTCGACCG TGCGGGCCTG GCCGGAGCAG ACGGTGCCAC ACACCATGGG
GCTTATGACT TGGCCTATAT GCGCTGTATC CCTAACATGA CTGTTGCAGC CCCCATGAAC
GAAGAAGAAT TGCGCAACCT GATGTTTACA GCGCAGCAGG AAAATGCTGG CCCTTTTTCT
ATCCGTTACC CCAGGGGAAA TGGTGTAATG CCCGACTGGA AAAGGCCATT TAAAGCCCTT
GAAATTGGTA AAGGCAGGAA AATATGTGAT GGCGAGCAAG TTGCGATACT GACCATTGGG
CATGTAGGAA ATTTTGCTGT GGCAGCTTGC AAAGAACTGA ACAGTGAAGG CATACATCCT
GCCCATTATG ATATGCGCTT TGTGAAGCCC ATTGATGAGG CTCTGCTGCA CGATGTATTT
AAACGTTACA AAAACATTGT TACAGTTGAA GATGGTTGTT TACAAGGTGG AATGGGTACT
GCGGTACTTG AATTCATGGC CGACCATCAA TACAGCGCAC AGGTAATCAG ACTGGGCATA
CCTGACGAGT TTATTGAACA TGGAGAGCAG GCTGAGCTAT GGGCACTTTG TGGTTATGAC
ACCCATTCGA TCATCAGCAC AATAAAAAAA ATTGCAGTAG GCAGAACAAC TGAAACAATG
GCCTCTTAG
|
|---|
| Protein sequence | MEDINGLFLP NINYPADLKQ YKEQDLEQIA QELRQYIIDV VSVNGGHFAA SLGVVELTVA
LHYVLNTPYD KLVWDVGHQA YGHKILTGRK DVFHTNRILN GISGFPKISE SEYDTFGVGH
SSTSISAALG MAVASHYKGE TDRQHVAVIG DGAMTAGLAF EGLNHAGIEN SNLLVILNDN
CMSIDPNVGA LKEYLTNITT SKSYNRFRED ISQVLFKLSE LGPNAHKFVK KIEKSIKGTL
LKQSNMFEAL NFRYFGPVDG HDVQRLVQVI RDLKDIPGPK LLHCVTLKGK GFALAEKDQT
KWHAPGLFDK ITGEIKKSVS DKPQPPKYQD VFGHTLVELA EANKKIVGIT PAMPSGSSMN
IMMKAMPNRA FDVGIAEQHA VTFSAGLATQ GLVPFCNIYS SFMQRAYDQV IHDVAIQNLN
VIFCLDRAGL AGADGATHHG AYDLAYMRCI PNMTVAAPMN EEELRNLMFT AQQENAGPFS
IRYPRGNGVM PDWKRPFKAL EIGKGRKICD GEQVAILTIG HVGNFAVAAC KELNSEGIHP
AHYDMRFVKP IDEALLHDVF KRYKNIVTVE DGCLQGGMGT AVLEFMADHQ YSAQVIRLGI
PDEFIEHGEQ AELWALCGYD THSIISTIKK IAVGRTTETM AS
|
|---|
| |