Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3859 |
Symbol | glyA |
ID | 8254993 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 4629943 |
End bp | 4631214 |
Gene Length | 1272 bp |
Protein Length | 423 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644937523 |
Product | serine hydroxymethyltransferase |
Protein accession | YP_003094112 |
Protein GI | 255533740 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTAGAG ATACTTTAAT TTTTGATTTG ATTGACAGGG AATTGGACCG TCAGGAAAAT GGTCTTGAAC TGATTGCATC TGAAAACTTT GTAAGCAAAC AGGTAATGGA AGCCGCAGGT TCTTGTTTAA CTAATAAATA TGCCGAAGGC CTTCCGGGTA AAAGGTATTA TGGTGGATGC CAGGTGGTTG ATCAGGTAGA GAGCATTGCA ATTGAGCGTG CTAAAAAACT TTTTGGTGCA GAGTGGGTTA ACGTACAACC GCATTCAGGT GCGCAGGCAA ATGCTGCAGT AATGCTGGCA GTGATCCAGC CAGGCGATAA GATCCTTGGT TTTGACCTCT CTCATGGCGG ACACCTTACA CATGGTTCAC CGGTTAACTT TTCAGGAAAA TTGTATCATC CGTTATTTTA TGGTGTAAAG AAAGAAGATG GAAGAATAGA CTATGCCAAA CTGGAAGAAG TTGCTTTGGC TGAGCGTCCT AAACTGATCA TTGTTGGTGC TTCAGCTTAT TCAAGGGAAT GGGATTATGC TTTTGTACGT AGTGTAGCAG ATAAAATCGG CGCATTGGTA ATGGCAGATA TCTCTCATCC TGCAGGCTTA ATTGCCCGTG GATTGTTACA AAATCCACTT CCACACTGTC ATATCGTAAC CACAACCACA CATAAAACTT TACGTGGTCC GCGTGGTGGT ATGATCATGA TGGGTAAAGA TTTTGAAAAC CCTTTCGGAT TAAAAACCCC TAAAGGTGAG ACCCGTATGA TGTCTTCAGT TTTGGATATG GCGGTTTTCC CGGGAACACA GGGTGGCCCG CTTGAACACA TCATTGCAGC TAAGGCCATC GCCTTTGGTG AAGCGTTAAG CGATGAATAT TTAGCTTATG TAAAACAGGT ACAGGCAAAT GCACAGGCTA TGGCCAAAGC TTTTGTAGCT AAAGGCTATG GCATCATTTC AGGTGGTACG GATAACCATT TAATGCTGAT CGACCTGCGT AATAAAAATA TCACCGGTAA ACTCGCTGAA AGTGCATTGG AAAAAGCAGA TATTACCGTA AATAAAAATA TGGTTCCGTT TGATGACAAA TCACCATTTG TAACTTCTGG AATCAGGGTA GGTACAGCTG CTATTACTAC CAGAGGTTTC AAAGAATCCG AAATGGAGCA GATCGTTGAA CTGATTGATC AGGTTCTGAC CAATGCAGAA GATGAAAATA ATTTGAAAGA GGTAAAAGAA AAAGTGATAA GTTTAGTAAG CCGTTTCCCA TTGTATAAAT AA
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Protein sequence | MTRDTLIFDL IDRELDRQEN GLELIASENF VSKQVMEAAG SCLTNKYAEG LPGKRYYGGC QVVDQVESIA IERAKKLFGA EWVNVQPHSG AQANAAVMLA VIQPGDKILG FDLSHGGHLT HGSPVNFSGK LYHPLFYGVK KEDGRIDYAK LEEVALAERP KLIIVGASAY SREWDYAFVR SVADKIGALV MADISHPAGL IARGLLQNPL PHCHIVTTTT HKTLRGPRGG MIMMGKDFEN PFGLKTPKGE TRMMSSVLDM AVFPGTQGGP LEHIIAAKAI AFGEALSDEY LAYVKQVQAN AQAMAKAFVA KGYGIISGGT DNHLMLIDLR NKNITGKLAE SALEKADITV NKNMVPFDDK SPFVTSGIRV GTAAITTRGF KESEMEQIVE LIDQVLTNAE DENNLKEVKE KVISLVSRFP LYK
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